- using R version 2.10.0 (2009-10-26)
- using session charset: ASCII
- checking for file 'VR/DESCRIPTION' ... OK
- looks like 'VR' is a package bundle
- this is bundle 'VR' version '7.2-48'
- checking bundle dependencies ... OK
- checking if this is a source bundle ... OK
- checking for executable files ... OK
- checking whether bundle 'VR' can be installed ... OK
- checking 'MASS' in bundle 'VR'
** checking package directory ... OK
** checking for portable file names ... OK
** checking for sufficient/correct file permissions ... OK
** checking for file 'DESCRIPTION.in' ... OK
** checking DESCRIPTION meta-information ... OK
** checking top-level files ... OK
** checking index information ... OK
** checking package subdirectories ... OK
** checking R files for non-ASCII characters ... OK
** checking R files for syntax errors ... OK
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking for unstated dependencies in R code ... OK
** checking S3 generic/method consistency ... OK
** checking replacement functions ... OK
** checking foreign function calls ... OK
** checking R code for possible problems ... NOTE
glmmPQL: no visible binding for global variable 'wts'
** checking Rd files ... OK
** checking Rd metadata ... OK
** checking Rd cross-references ... WARNING
Missing link(s) in documentation object './man/confint.Rd':
'[base]{confint}'
See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.
** checking for missing documentation entries ... OK
** checking for code/documentation mismatches ... OK
** checking Rd \usage sections ... OK
** checking data for non-ASCII characters ... OK
** checking line endings in C/C++/Fortran sources/headers ... OK
** checking line endings in Makefiles ... OK
** checking for portable use of $BLAS_LIBS ... OK
** checking examples ... OK
** checking tests ... OK
- checking 'class' in bundle 'VR'
** checking package directory ... OK
** checking for portable file names ... OK
** checking for sufficient/correct file permissions ... OK
** checking for file 'DESCRIPTION.in' ... OK
** checking DESCRIPTION meta-information ... OK
** checking top-level files ... OK
** checking index information ... OK
** checking package subdirectories ... OK
** checking R files for non-ASCII characters ... OK
** checking R files for syntax errors ... OK
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking for unstated dependencies in R code ... OK
** checking S3 generic/method consistency ... OK
** checking replacement functions ... OK
** checking foreign function calls ... OK
** checking R code for possible problems ... OK
** checking Rd files ... OK
** checking Rd metadata ... OK
** checking Rd cross-references ... OK
** checking for missing documentation entries ... OK
** checking for code/documentation mismatches ... OK
** checking Rd \usage sections ... OK
** checking line endings in C/C++/Fortran sources/headers ... OK
** checking line endings in Makefiles ... OK
** checking for portable use of $BLAS_LIBS ... OK
** checking examples ... OK
- checking 'nnet' in bundle 'VR'
** checking package directory ... OK
** checking for portable file names ... OK
** checking for sufficient/correct file permissions ... OK
** checking for file 'DESCRIPTION.in' ... OK
** checking DESCRIPTION meta-information ... OK
** checking top-level files ... OK
** checking index information ... OK
** checking package subdirectories ... OK
** checking R files for non-ASCII characters ... OK
** checking R files for syntax errors ... OK
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking for unstated dependencies in R code ... OK
** checking S3 generic/method consistency ... OK
** checking replacement functions ... OK
** checking foreign function calls ... OK
** checking R code for possible problems ... OK
** checking Rd files ... OK
** checking Rd metadata ... OK
** checking Rd cross-references ... OK
** checking for missing documentation entries ... OK
** checking for code/documentation mismatches ... OK
** checking Rd \usage sections ... OK
** checking line endings in C/C++/Fortran sources/headers ... OK
** checking line endings in Makefiles ... OK
** checking for portable use of $BLAS_LIBS ... OK
** checking examples ... OK
- checking 'spatial' in bundle 'VR'
** checking package directory ... OK
** checking for portable file names ... OK
** checking for sufficient/correct file permissions ... OK
** checking for file 'DESCRIPTION.in' ... OK
** checking DESCRIPTION meta-information ... OK
** checking top-level files ... OK
** checking index information ... OK
** checking package subdirectories ... OK
** checking R files for non-ASCII characters ... OK
** checking R files for syntax errors ... OK
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking for unstated dependencies in R code ... OK
** checking S3 generic/method consistency ... OK
** checking replacement functions ... OK
** checking foreign function calls ... OK
** checking R code for possible problems ... OK
** checking Rd files ... OK
** checking Rd metadata ... OK
** checking Rd cross-references ... OK
** checking for missing documentation entries ... OK
** checking for code/documentation mismatches ... OK
** checking Rd \usage sections ... OK
** checking line endings in C/C++/Fortran sources/headers ... OK
** checking line endings in Makefiles ... OK
** checking for portable use of $BLAS_LIBS ... OK
** checking examples ... OK
- elapsed time (check, wall clock): 1:41