• using R version 2.14.0 (2011-10-31)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'Rcapture/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'Rcapture' version '1.2-0'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package 'Rcapture' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  closedp.0: no visible binding for global variable 'ans'
  closedp.bc: no visible binding for global variable 'histpos'
  closedp.bc: no visible binding for global variable 'mXomit'
  closedpCI.0: no visible binding for global variable 'ans'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking for left-overs from vignette generation ... NOTE
  file 'inst/doc/Rplots.pdf' will not be installed: please remove it
• checking sizes of PDF files under 'inst/doc' ... NOTE
  'qpdf' made some significant size reductions:
  compacted 'RcaptureJSS.pdf' from 372Kb to 243Kb
  consider running tools::compactPDF() on these files
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  Warning in openp(bunting, dfreq = TRUE, keep = keep2) :
  the design matrix is not of full rank; some loglinear parameter estimations cannot be evaluated
  Warning in openp(bunting, dfreq = TRUE, keep = keep3) :
  the design matrix is not of full rank; some loglinear parameter estimations cannot be evaluated
  Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
  Running 'texi2dvi' on 'RcaptureJSS.tex' failed.
  LaTeX errors:
  /Rcapture.Rcheck/vign_test/Rcapture/inst/doc/RcaptureJSS.tex:12: LaTeX Error: M
  issing \begin{document}.
  
  See the LaTeX manual or LaTeX Companion for explanation.
  Type H <return> for immediate help.
  Calls: buildVignettes -> texi2pdf -> texi2dvi
  Execution halted
  
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 8:51