• using R version 2.10.0 alpha (2009-10-01 r49916)
  • using session charset: ASCII
  • checking for file 'PHYLOGR/DESCRIPTION' ... OK
  • this is package 'PHYLOGR' version '1.0.6'
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'PHYLOGR' can be installed ... WARNING
    Found the following significant warnings:
    Warning: ./man/Lacertid.IC.Rd:22: unexpected '}'
    Warning: ./man/Lacertid.Original.Rd:28: unexpected '}'
    Warning: ./man/Lacertid.varcov.Rd:20: unexpected '}'
    Warning: ./man/SimulExample.Rd:10: unexpected '}'
    Warning: ./man/SimulExample.Rd:34: unexpected '}'
    Warning: bad markup (extra space?) at print.summary.phylog.Rd:19:11
    Warning: bad markup (extra space?) at summary.phylog.cancor.Rd:58:31
    Warning: bad markup (extra space?) at summary.phylog.cancor.Rd:62:30
    See http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/PHYLOGR-00install.html for details.
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    lm.phylog: no visible binding for global variable 'sim.counter'
  • checking Rd files ... WARNING
    prepare_Rd: Helper.functions.Rd:23-24: Dropping empty section \usage
    prepare_Rd: Helper.functions.Rd:25-26: Dropping empty section \arguments
    prepare_Rd: Lacertid.IC.Rd:22: unexpected '}'
    prepare_Rd: Lacertid.Original.Rd:28: unexpected '}'
    prepare_Rd: Lacertid.varcov.Rd:20: unexpected '}'
    prepare_Rd: SimulExample.Rd:10: unexpected '}'
    prepare_Rd: SimulExample.Rd:34: unexpected '}'
    prepare_Rd: bad markup (extra space?) at print.summary.phylog.Rd:19:11
    prepare_Rd: print.summary.phylog.Rd:50-51: Dropping empty section \examples
    prepare_Rd: bad markup (extra space?) at summary.phylog.cancor.Rd:58:31
    prepare_Rd: bad markup (extra space?) at summary.phylog.cancor.Rd:62:30
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking data for non-ASCII characters ... OK
  • checking examples ... OK
  • checking PDF version of manual ... OK
  • elapsed time (check, wall clock): 0:22