• using R version 2.10.0 alpha (2009-10-01 r49916)
• using session charset: ASCII
• checking for file 'PHYLOGR/DESCRIPTION' ... OK
• this is package 'PHYLOGR' version '1.0.6'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'PHYLOGR' can be installed ... WARNING
  Found the following significant warnings:
  Warning: ./man/Lacertid.IC.Rd:22: unexpected '}'
  Warning: ./man/Lacertid.Original.Rd:28: unexpected '}'
  Warning: ./man/Lacertid.varcov.Rd:20: unexpected '}'
  Warning: ./man/SimulExample.Rd:10: unexpected '}'
  Warning: ./man/SimulExample.Rd:34: unexpected '}'
  Warning: bad markup (extra space?) at print.summary.phylog.Rd:19:11
  Warning: bad markup (extra space?) at summary.phylog.cancor.Rd:58:31
  Warning: bad markup (extra space?) at summary.phylog.cancor.Rd:62:30
  See http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/PHYLOGR-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  lm.phylog: no visible binding for global variable 'sim.counter'
• checking Rd files ... WARNING
  prepare_Rd: Helper.functions.Rd:23-24: Dropping empty section \usage
  prepare_Rd: Helper.functions.Rd:25-26: Dropping empty section \arguments
  prepare_Rd: Lacertid.IC.Rd:22: unexpected '}'
  prepare_Rd: Lacertid.Original.Rd:28: unexpected '}'
  prepare_Rd: Lacertid.varcov.Rd:20: unexpected '}'
  prepare_Rd: SimulExample.Rd:10: unexpected '}'
  prepare_Rd: SimulExample.Rd:34: unexpected '}'
  prepare_Rd: bad markup (extra space?) at print.summary.phylog.Rd:19:11
  prepare_Rd: print.summary.phylog.Rd:50-51: Dropping empty section \examples
  prepare_Rd: bad markup (extra space?) at summary.phylog.cancor.Rd:58:31
  prepare_Rd: bad markup (extra space?) at summary.phylog.cancor.Rd:62:30
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 0:22