• using R version 2.15.0 RC (2012-03-29 r58868)
  • using platform: i386-apple-darwin9.8.0 (32-bit)
  • using session charset: ASCII
  • checking for file 'MethComp/DESCRIPTION' ... OK
  • this is package 'MethComp' version '1.15'
  • checking package namespace information ... OK
  • checking package dependencies ... NOTE
    Package suggested but not available for checking: 'BRugs'
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package 'MethComp' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of 'data' directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking sizes of PDF files under 'inst/doc' ... OK
  • checking installed files from 'inst/doc' ... OK
  • checking examples ... ERROR
    Running examples in 'MethComp-Ex.R' failed
    The error most likely occurred in:

    > ### Name: MCmcmc
    > ### Title: Fit a model for method comparison studies using WinBUGS
    > ### Aliases: MCmcmc print.MCmcmc summary.MCmcmc subset.MCmcmc mcmc.MCmcmc
    > ### Keywords: models design regression nonlinear
    >
    > ### ** Examples
    >
    > data( ox )
    > str( ox )
    'data.frame': 354 obs. of 4 variables:
    $ meth: Factor w/ 2 levels "CO","pulse": 1 1 1 1 1 1 1 1 1 1 ...
    $ item: num 1 1 1 2 2 2 3 3 3 4 ...
    $ repl: num 1 2 3 1 2 3 1 2 3 1 ...
    $ y : num 78 76.4 77.2 68.7 67.6 68.3 82.9 80.1 80.7 62.3 ...
    > MCmcmc( ox, MI=TRUE, IR=TRUE, code.only=TRUE, bugs.code.file="" )
    Loading required package: coda
    Loading required package: lattice
    Loading required package: R2WinBUGS
    Loading required package: BRugs
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
    there is no package called 'BRugs'
    Loading required package: rjags
    linking to JAGS 3.1.0
    module basemod loaded
    module bugs loaded
    Error in MCmcmc(ox, MI = TRUE, IR = TRUE, code.only = TRUE, bugs.code.file = "") :
    Using the MCmcmc function with Brugs/openbugs option requiresthat the BRugs package is installed
    Execution halted
  • elapsed time (check, wall clock): 1:28