• using R version 2.9.0 Patched (2009-06-14 r48774)
  • using session charset: ASCII
  • using options '--no-examples --no-tests --no-vignettes'
  • checking for file 'JGR/DESCRIPTION' ... OK
  • this is package 'JGR' version '1.6-7'
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'JGR' can be installed ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... WARNING
    2009-06-15 03:34:41.549 R[19335] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:41.549 R[19335] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
  • checking S3 generic/method consistency ... WARNING
    2009-06-15 03:34:42.764 R[19338] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:42.765 R[19338] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
    See section 'Generic functions and methods' of the 'Writing R Extensions'
    manual.
  • checking replacement functions ... WARNING
    2009-06-15 03:34:44.716 R[19341] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:44.716 R[19341] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
    In R, the argument of a replacement function which corresponds to the right
    hand side must be named 'value'.
  • checking foreign function calls ... WARNING
    2009-06-15 03:34:45.875 R[19344] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:45.875 R[19344] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
    See the chapter 'System and foreign language interfaces' of the 'Writing R
    Extensions' manual.
  • checking R code for possible problems ... NOTE
    2009-06-15 03:34:47.185 R[19350] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:47.185 R[19350] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
    .generate.run.script: no visible binding for global variable
    '.jgr.pkg.path'
    .refresh: no visible binding for global variable '.jgr.works'
    JGR: no visible binding for global variable '.jgr.works'
    JGR: no visible binding for global variable '.jgr.pkg.path'
    installPackages: no visible binding for global variable '.jgr.works'
    jgr.addMenu: no visible binding for global variable '.jgr.works'
    jgr.addMenuItem: no visible binding for global variable '.jgr.works'
    jgr.addMenuSeparator: no visible binding for global variable
    '.jgr.works'
    jgr.pager: no visible binding for global variable '.jgr.works'
    jgr.set.options: no visible binding for global variable '.jgr.works'
    object.browser: no visible binding for global variable '.jgr.works'
    package.manager: no visible binding for global variable '.jgr.works'
    2009-06-15 03:34:48.743 R[19353] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:48.743 R[19353] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  • checking Rd files ... OK
  • checking Rd files against version 2 parser ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... WARNING
    2009-06-15 03:34:50.837 R[19365] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:50.837 R[19365] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
    All user-level objects in a package should have documentation entries.
    See the chapter 'Writing R documentation files' in manual 'Writing R
    Extensions'.
  • checking for code/documentation mismatches ... WARNING
    2009-06-15 03:34:51.966 R[19368] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:51.966 R[19368] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
    2009-06-15 03:34:53.132 R[19371] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:53.132 R[19371] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
    2009-06-15 03:34:54.308 R[19374] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:54.308 R[19374] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  • checking Rd \usage sections ... NOTE
    2009-06-15 03:34:55.741 R[19380] [Java CocoaComponent compatibility mode]: Enabled
    2009-06-15 03:34:55.741 R[19380] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter 'Writing R documentation files' in manual 'Writing R
    Extensions'.
  • checking examples ... SKIPPED
  • checking PDF version of manual ... OK
  • using check arguments '--install=fake'
  • elapsed time (check, wall clock): 0:24