• using R version 2.9.0 Patched (2009-06-14 r48774)
• using session charset: ASCII
• using options '--no-examples --no-tests --no-vignettes'
• checking for file 'JGR/DESCRIPTION' ... OK
• this is package 'JGR' version '1.6-7'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'JGR' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... WARNING
  2009-06-15 03:34:41.549 R[19335] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:41.549 R[19335] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  See the information on DESCRIPTION files in the chapter 'Creating R
  packages' of the 'Writing R Extensions' manual.
• checking S3 generic/method consistency ... WARNING
  2009-06-15 03:34:42.764 R[19338] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:42.765 R[19338] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  See section 'Generic functions and methods' of the 'Writing R Extensions'
  manual.
• checking replacement functions ... WARNING
  2009-06-15 03:34:44.716 R[19341] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:44.716 R[19341] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  In R, the argument of a replacement function which corresponds to the right
  hand side must be named 'value'.
• checking foreign function calls ... WARNING
  2009-06-15 03:34:45.875 R[19344] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:45.875 R[19344] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  See the chapter 'System and foreign language interfaces' of the 'Writing R
  Extensions' manual.
• checking R code for possible problems ... NOTE
  2009-06-15 03:34:47.185 R[19350] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:47.185 R[19350] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  .generate.run.script: no visible binding for global variable
  '.jgr.pkg.path'
  .refresh: no visible binding for global variable '.jgr.works'
  JGR: no visible binding for global variable '.jgr.works'
  JGR: no visible binding for global variable '.jgr.pkg.path'
  installPackages: no visible binding for global variable '.jgr.works'
  jgr.addMenu: no visible binding for global variable '.jgr.works'
  jgr.addMenuItem: no visible binding for global variable '.jgr.works'
  jgr.addMenuSeparator: no visible binding for global variable
  '.jgr.works'
  jgr.pager: no visible binding for global variable '.jgr.works'
  jgr.set.options: no visible binding for global variable '.jgr.works'
  object.browser: no visible binding for global variable '.jgr.works'
  package.manager: no visible binding for global variable '.jgr.works'
  2009-06-15 03:34:48.743 R[19353] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:48.743 R[19353] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
• checking Rd files ... OK
• checking Rd files against version 2 parser ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... WARNING
  2009-06-15 03:34:50.837 R[19365] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:50.837 R[19365] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  All user-level objects in a package should have documentation entries.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking for code/documentation mismatches ... WARNING
  2009-06-15 03:34:51.966 R[19368] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:51.966 R[19368] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  2009-06-15 03:34:53.132 R[19371] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:53.132 R[19371] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  2009-06-15 03:34:54.308 R[19374] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:54.308 R[19374] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
• checking Rd \usage sections ... NOTE
  2009-06-15 03:34:55.741 R[19380] [Java CocoaComponent compatibility mode]: Enabled
  2009-06-15 03:34:55.741 R[19380] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking examples ... SKIPPED
• checking PDF version of manual ... OK
• using check arguments '--install=fake'
• elapsed time (check, wall clock): 0:24