Check results for 'Geneland'

using R version 2.10.0 Patched (2009-11-05 r50313)
using session charset: ASCII
checking for file 'Geneland/DESCRIPTION' ... OK
this is package 'Geneland' version '3.1.5'
checking package dependencies ... OK
checking if this is a source package ... OK
checking for executable files ... OK
checking whether package 'Geneland' can be installed ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
assignment to 'probs'
Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
assignment to 'pops'
Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
assignment to 'runs'
Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
global variable 'probs'
Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
global variable 'pops'
Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
global variable 'runs'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
'<<-' assignment to 'probs'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
'<<-' assignment to 'pops'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
'<<-' assignment to 'runs'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
global variable 'runs'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
global variable 'pops'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
global variable 'probs'
Geneland.GUI : run : RunmcmcFmodel : Output: no visible binding for
global variable 'runs'
Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for '<<-'
assignment to 'pops'
Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for global
variable 'pops'
Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for '<<-'
assignment to 'probs'
Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for global
variable 'probs'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
'<<-' assignment to 'runs'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
global variable 'runs'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
'<<-' assignment to 'pops'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
global variable 'pops'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
'<<-' assignment to 'probs'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
global variable 'probs'
PostProcessChain: no visible binding for global variable 'spatial'
checking Rd files ... NOTE
prepare_Rd: EstimateFreqNA.Rd:29: Dropping empty section \keyword
prepare_Rd: FormatGenotypes.Rd:35: Dropping empty section \keyword
prepare_Rd: Fstat.Rd:46: Dropping empty section \keyword
prepare_Rd: Fstat.output.Rd:37: Dropping empty section \keyword
prepare_Rd: Geneland-package.Rd:141: Dropping empty section \keyword
prepare_Rd: Geneland-package.Rd:143: Dropping empty section \seealso
prepare_Rd: Geneland-package.Rd:145: Dropping empty section \examples
prepare_Rd: Geneland.GUI.Rd:24: Dropping empty section \keyword
prepare_Rd: Geneland.GUI.Rd:15: Dropping empty section \details
prepare_Rd: Geneland.GUI.Rd:16: Dropping empty section \value
prepare_Rd: Geneland.GUI.Rd:19: Dropping empty section \note
prepare_Rd: Geneland.GUI.Rd:17: Dropping empty section \references
prepare_Rd: Geneland.GUI.Rd:20: Dropping empty section \seealso
prepare_Rd: MCMC.Rd:270: Dropping empty section \keyword
prepare_Rd: MCMC.Rd:268: Dropping empty section \examples
prepare_Rd: PlotDrift.Rd:22: Dropping empty section \keyword
prepare_Rd: PlotFreq.Rd:33: Dropping empty section \keyword
prepare_Rd: PlotFreqA.Rd:29: Dropping empty section \keyword
prepare_Rd: PlotTessellation.Rd:26: Dropping empty section \keyword
prepare_Rd: Plotnpop.Rd:29: Dropping empty section \keyword
prepare_Rd: Plotntile.Rd:24: Dropping empty section \keyword
prepare_Rd: PostProcessChain.Rd:76: Dropping empty section \keyword
prepare_Rd: PostProcessMultChain.Rd:80: Dropping empty section \keyword
prepare_Rd: PosteriorMode.Rd:34: Dropping empty section \keyword
prepare_Rd: coordinates.Rd:14: Dropping empty section \keyword
prepare_Rd: coordinates.Rd:8: Dropping empty section \usage
prepare_Rd: coordinates.Rd:11: Dropping empty section \author
prepare_Rd: coordinates.Rd:12: Dropping empty section \references
prepare_Rd: genotypes.Rd:14: Dropping empty section \keyword
prepare_Rd: genotypes.Rd:8: Dropping empty section \usage
prepare_Rd: genotypes.Rd:11: Dropping empty section \author
prepare_Rd: genotypes.Rd:12: Dropping empty section \references
prepare_Rd: gl2gp.Rd:24: Dropping empty section \keyword
prepare_Rd: nullify.Rd:25: Dropping empty section \keyword
prepare_Rd: nullify.Rd:20: Dropping empty section \references
prepare_Rd: nullify.Rd:23: Dropping empty section \examples
prepare_Rd: show.simdata.Rd:59: Dropping empty section \keyword
prepare_Rd: show.simdata.Rd:49-51: Dropping empty section \details
prepare_Rd: show.simdata.Rd:57: Dropping empty section \note
prepare_Rd: show.simdata.Rd:58: Dropping empty section \examples
prepare_Rd: simFmodel.Rd:74: Dropping empty section \keyword
prepare_Rd: simdata.Rd:132: Dropping empty section \keyword
prepare_Rd: simdata.Rd:107: Dropping empty section \note
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking data for non-ASCII characters ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $BLAS_LIBS ... OK
checking examples ... OK
checking PDF version of manual ... OK
elapsed time (check, wall clock): 0:55