• using R version 2.9.0 (2009-04-17)
• using session charset: ASCII
• checking for file 'FAiR/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'FAiR' version '0.4-4'
• package encoding: UTF-8
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'FAiR' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  FAiR_DAG: no visible global function definition for 'nodes'
  FAiR_DAG: no visible global function definition for 'addEdge'
  FAiR_DAG: no visible global function definition for 'subGraph'
  FAiR_hetcor: no visible global function definition for 'hetcor'
• checking Rd files ... OK
• checking Rd files against version 2 parser ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking tests ... ERROR
  Running the tests in 'tests/testsMANIFEST.R' failed.
  Last 13 lines of output:
  3: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
  4: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
  5: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
  6: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
  7: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
  >
  > stopifnot(require(polycor))
  Loading required package: polycor
  Error: require(polycor) is not TRUE
  In addition: Warning message:
  In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
  there is no package called 'polycor'
  Execution halted
• elapsed time (check, wall clock): 3:20