- using R version 2.9.0 (2009-04-17)
- using session charset: ASCII
- checking for file 'FAiR/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'FAiR' version '0.4-4'
- package encoding: UTF-8
- checking package name space information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'FAiR' can be installed ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the name space can be loaded with stated dependencies ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
FAiR_DAG: no visible global function definition for 'nodes'
FAiR_DAG: no visible global function definition for 'addEdge'
FAiR_DAG: no visible global function definition for 'subGraph'
FAiR_hetcor: no visible global function definition for 'hetcor'
- checking Rd files ... OK
- checking Rd files against version 2 parser ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $BLAS_LIBS ... OK
- checking examples ... OK
- checking tests ... ERROR
Running the tests in 'tests/testsMANIFEST.R' failed.
Last 13 lines of output:
3: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
4: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
5: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
6: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
7: In nlm(lf, startvals, ...) : NA/Inf replaced by maximum positive value
>
> stopifnot(require(polycor))
Loading required package: polycor
Error: require(polycor) is not TRUE
In addition: Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called 'polycor'
Execution halted
- elapsed time (check, wall clock): 3:20