Check results for 'Deducer'

using R version 2.14.0 (2011-10-31)
using platform: i386-apple-darwin9.8.0 (32-bit)
using session charset: ASCII
checking for file 'Deducer/DESCRIPTION' ... OK
this is package 'Deducer' version '0.5-1'
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
checking for executable files ... OK
checking whether package 'Deducer' can be installed ... OK
checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
java 4.3Mb
javasrc 1.6Mb
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... WARNING
2011-12-06 05:09:34.615 R[94956:613] Process manager already initialized -- can't fully enable headless mode.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
checking S3 generic/method consistency ... WARNING
2011-12-06 05:09:38.153 R[94959:613] Process manager already initialized -- can't fully enable headless mode.
See section 'Generic functions and methods' of the 'Writing R
Extensions' manual.
checking replacement functions ... WARNING
2011-12-06 05:09:42.341 R[94962:613] Process manager already initialized -- can't fully enable headless mode.
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
checking foreign function calls ... WARNING
2011-12-06 05:09:45.341 R[94965:613] Process manager already initialized -- can't fully enable headless mode.
See the chapter 'System and foreign language interfaces' of the
'Writing R Extensions' manual.
checking R code for possible problems ... NOTE
File 'Deducer/R/zzz.R':
.onLoad calls:
cat("\nNamespace for JGR could not be found\n")
cat("\nLoading Deducer without GUI. If you wish the GUI to load, run options(DeducerNoGUI=FALSE) before loading Deducer\n")
cat("\nNOTE: Environmental variable NOAWT set. Loading Deducer without GUI.\n")
cat("\nWarning: Problem initiating JRI. The Java GUI will not be available.\n")
print(jriOK)
cat("\nWarning: Problem initiating JRI. Make sure you built R with shared libraries The Java GUI will not be available.\n")
print(jriOK)
cat("Warning: Unable to start Deducer's Java class. The Java GUI will not be available.")
print(deducer)
cat("\n\nDeducer has been loaded from within the Windows Rgui. \n\t\t\t\tFor the best experience, you are encouraged to use JGR console which can be\n\t\t\t\tdownloaded from: http://jgr.markushelbig.org/\n")
cat("\n\nNote Non-JGR console detected:\n\tDeducer is best used from within JGR (http://jgr.markushelbig.org/).\n\t\t\t\t\t\t\tTo Bring up GUI dialogs, type deducer().\n")

Package startup functions should use 'packageStartupMessage' to
generate messages.
See section 'Good practice' in ?.onAttach.

2011-12-06 05:09:49.388 R[94974:613] Process manager already initialized -- can't fully enable headless mode.
ggcorplot: no visible binding for global variable 'x_var'
ggcorplot: no visible binding for global variable 'y_var'
ggcorplot: no visible binding for global variable 'trans'
ggcorplot: no visible binding for global variable 'rsq'
ggcorplot: no visible binding for global variable 'p'
ggcorplot: no visible binding for global variable 'x_label'
onesample.plot: no visible binding for global variable 'Value'
onesample.plot: no visible binding for global variable '..density..'
oneway.plot: no visible binding for global variable 'Factor'
oneway.plot: no visible binding for global variable 'Value'
plot.cor.matrix: no visible binding for global variable 'x.o'
plot.cor.matrix: no visible binding for global variable 'y.o'
rocplot: no visible binding for global variable 'Spec'
rocplot: no visible binding for global variable 'Sens'
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... WARNING
2011-12-06 05:10:01.725 R[94986:613] Process manager already initialized -- can't fully enable headless mode.
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
checking for code/documentation mismatches ... WARNING
2011-12-06 05:10:04.753 R[94989:613] Process manager already initialized -- can't fully enable headless mode.
2011-12-06 05:10:08.028 R[94992:613] Process manager already initialized -- can't fully enable headless mode.
2011-12-06 05:10:11.065 R[94995:613] Process manager already initialized -- can't fully enable headless mode.
checking Rd \usage sections ... NOTE
2011-12-06 05:10:14.477 R[95001:613] Process manager already initialized -- can't fully enable headless mode.
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
checking Rd contents ... OK
checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: 'hexbin'
checking examples ... OK
checking PDF version of manual ... OK
WARNING: There were 6 warnings, see
'/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.14/Deducer.Rcheck/00check.log'
for details
elapsed time (check, wall clock): 1:46