• using R version 2.10.0 Patched (2009-11-18 r50482)
• using session charset: ASCII
• checking for file 'CADStat/DESCRIPTION' ... OK
• this is package 'CADStat' version '2.1-21'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'CADStat' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... WARNING
  2009-11-18 14:23:34.106 R[57036:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
  See the information on DESCRIPTION files in the chapter 'Creating R
  packages' of the 'Writing R Extensions' manual.
• checking S3 generic/method consistency ... WARNING
  2009-11-18 14:23:39.665 R[57040:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
  See section 'Generic functions and methods' of the 'Writing R Extensions'
  manual.
• checking replacement functions ... WARNING
  2009-11-18 14:23:46.757 R[57044:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
  In R, the argument of a replacement function which corresponds to the right
  hand side must be named 'value'.
• checking foreign function calls ... WARNING
  2009-11-18 14:23:51.724 R[57050:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
  See the chapter 'System and foreign language interfaces' of the 'Writing R
  Extensions' manual.
• checking R code for possible problems ... NOTE
  2009-11-18 14:23:56.430 R[57056:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
  bioinfer.new.JGR: no visible binding for global variable 'errorMessage'
  2009-11-18 14:24:02.803 R[57059:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... WARNING
  2009-11-18 14:24:09.324 R[57071:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
  All user-level objects in a package should have documentation entries.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking for code/documentation mismatches ... WARNING
  2009-11-18 14:24:13.485 R[57074:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
  2009-11-18 14:24:17.650 R[57077:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
  2009-11-18 14:24:21.772 R[57085:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
• checking Rd \usage sections ... NOTE
  2009-11-18 14:24:26.126 R[57091:613] Apple AWT Java VM was loaded on first thread -- can't start AWT.
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking examples ... OK
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 1:31