- using R version 2.15.0 Patched (2012-06-09 r59552)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'BayesXsrc/DESCRIPTION' ... OK
- this is package 'BayesXsrc' version '2.1-1'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package 'BayesXsrc' can be installed ... OK
- checking installed package size ... NOTE
installed size is 8.2Mb
sub-directories of 1Mb or more:
libs 8.1Mb
NB: this package is only installed for sub-architecture 'i386'
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ... OK
Running 'mcmc.R'
Comparing 'mcmc.Rout' to 'mcmc.Rout.save' ...6a7,8
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/temp
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/output
72c74
< APPROXIMATE RUN TIME: 2 seconds
---
> APPROXIMATE RUN TIME: 0 seconds
86c88
< Mean: 0.00297797
---
> Mean: 0.0120641
88,89c90,91
< Minimum: 0.0371113
< Maximum: 0.0288035
---
> Minimum: 0.0444994
> Maximum: 0.0170617
99c101
< Mean: 0.167325
---
> Mean: 0.235939
101,102c103,104
< Minimum: 0.581669
< Maximum: 0.435757
---
> Minimum: 0.670558
> Maximum: 0.398403
112c114
< Mean: 1.68281
---
> Mean: 0.402133
114,115c116,117
< Minimum: 0.471121
< Maximum: 9.90977
---
> Minimum: 0.864567
> Maximum: 2.83032
125c127
< Mean: 0.767444
---
> Mean: 0.283041
127,128c129,130
< Minimum: 0.945427
< Maximum: 1.33916
---
> Minimum: 0.598732
> Maximum: 1.05882
138c140
< Mean: 0.930217
---
> Mean: 3.01852
140,141c142,143
< Minimum: 0.992837
< Maximum: 0.201217
---
> Minimum: 0.631221
> Maximum: 29.0583
154,155c156,157
< Mean: 0.000372623
< Variance: 0.045103
---
> Mean: 0.00073483
> Variance: 0.0545616
167,170c169,172
< Mean: 0.00570135
< Variance: 0.0213097
< Minimum: 0.0470576
< Maximum: 0.0371323
---
> Mean: 0.0055385
> Variance: 0.0618065
> Minimum: 0.0428222
> Maximum: 0.0748301
180,182c182,184
< Mean: 0.0352352
< Variance: 0.122646
< Minimum: 0
---
> Mean: 0.0258003
> Variance: 0.00376635
> Minimum: 0.0761123
193,196c195,198
< Mean: 0.009399
< Variance: 0.0394707
< Minimum: 0.0517799
< Maximum: 0.11642
---
> Mean: 0.00806802
> Variance: 0.0839744
> Minimum: 0.0591563
> Maximum: 0.147929
206,209c208,211
< Mean: 0.0130621
< Variance: 0.136287
< Minimum: 0.226269
< Maximum: 0
---
> Mean: 0.0699433
> Variance: 0.720275
> Minimum: 0
> Maximum: 1.70914
222,224c224,226
< Mean: 4.59157e-05
< Variance: 0.0130485
< Minimum: 0.00150028
---
> Mean: 0.000238756
> Variance: 0.0259043
> Minimum: 0
235,238c237,240
< Mean: 0.00262084
< Variance: 0.0181924
< Minimum: 0.0610433
< Maximum: 0.0661934
---
> Mean: 0.0024004
> Variance: 0.0191615
> Minimum: 0.0356155
> Maximum: 0.027562
248,250c250,252
< Mean: 0.0173436
< Variance: 0.0423012
< Minimum: 0
---
> Mean: 0.0216987
> Variance: 0.101507
> Minimum: 0.323179
261,264c263,266
< Mean: 0.00292941
< Variance: 0.0358122
< Minimum: 0.0440965
< Maximum: 0.0450427
---
> Mean: 0.00619759
> Variance: 0.0751093
> Minimum: 0.424677
> Maximum: 0.116076
274,275c276,277
< Mean: 0.0114306
< Variance: 0.211577
---
> Mean: 0.117659
> Variance: 0.539608
277c279
< Maximum: 0.559393
---
> Maximum: 0.242684
290c292
< SIMULATION RUN TIME: 2 seconds
---
> SIMULATION RUN TIME: 0 seconds
305,311c307,313
< Mean: 1820.9776
< Std. Dev: 5.3705193
< 2.5% Quantile: 1812.3898
< 10% Quantile: 1814.6556
< 50% Quantile: 1820.5214
< 90% Quantile: 1828.1616
< 97.5% Quantile: 1832.8512
---
> Mean: 1820.6559
> Std. Dev: 5.6212139
> 2.5% Quantile: 1811.2326
> 10% Quantile: 1814.1349
> 50% Quantile: 1819.9995
> 90% Quantile: 1828.2074
> 97.5% Quantile: 1833.854
315,321c317,323
< Mean: 1000.9617
< Std. Dev: 44.791677
< 2.5% Quantile: 920.16342
< 10% Quantile: 945.02631
< 50% Quantile: 999.35601
< 90% Quantile: 1057.5705
< 97.5% Quantile: 1098.4237
---
> Mean: 998.98282
> Std. Dev: 43.455819
> 2.5% Quantile: 910.95993
> 10% Quantile: 944.28621
> 50% Quantile: 997.5653
> 90% Quantile: 1055.0596
> 97.5% Quantile: 1080.1162
330,332c332,334
< Deviance(bar_mu): 1806.679
< pD: 14.298642
< DIC: 1835.2763
---
> Deviance(bar_mu): 1806.4653
> pD: 14.19061
> DIC: 1834.8465
336,338c338,340
< Deviance(bar_mu): 985.65972
< pD: 15.302026
< DIC: 1016.2638
---
> Deviance(bar_mu): 983.84152
> pD: 15.141302
> DIC: 1014.1241
344,350c346,352
< Mean: 0.36173
< Std. dev.: 0.0162024
< 2.5% Quantile: 0.329426
< 10% Quantile: 0.341618
< 50% Quantile: 0.36178
< 90% Quantile: 0.382935
< 97.5% Quantile: 0.39426
---
> Mean: 0.362311
> Std. dev.: 0.0158258
> 2.5% Quantile: 0.333712
> 10% Quantile: 0.342526
> 50% Quantile: 0.361939
> 90% Quantile: 0.382146
> 97.5% Quantile: 0.395518
361c363
< const 1.79271 0.0193218 1.75702 1.79304 1.83125
---
> const 1.79288 0.0188866 1.75682 1.79247 1.82894
387,393c389,395
< Mean: 0.0217287
< Std. dev.: 0.013257
< 2.5% Quantile: 0.00703261
< 10% Quantile: 0.00962251
< 50% Quantile: 0.0185579
< 90% Quantile: 0.0373985
< 97.5% Quantile: 0.05871
---
> Mean: 0.0239194
> Std. dev.: 0.0171234
> 2.5% Quantile: 0.00717269
> 10% Quantile: 0.00984886
> 50% Quantile: 0.0194797
> 90% Quantile: 0.0439335
> 97.5% Quantile: 0.0705248
400,406c402,408
< Mean: 22.0698 (df: 7.39843)
< Std. dev.: 11.6881
< 2.5% Quantile: 6.13751 (df: 9.60658)
< 10% Quantile: 9.76005 (df: 8.76258)
< 50% Quantile: 19.5734 (df: 7.58915)
< 90% Quantile: 37.5423 (df: 6.59648)
< 97.5% Quantile: 51.3585 (df: 6.15576)
---
> Mean: 21.2581 (df: 7.4576)
> Std. dev.: 12.1211
> 2.5% Quantile: 5.15297 (df: 9.93666)
> 10% Quantile: 8.43793 (df: 9.02229)
> 50% Quantile: 18.5992 (df: 7.67132)
> 90% Quantile: 36.3494 (df: 6.64326)
> 97.5% Quantile: 51.8365 (df: 6.14309)
432,438c434,440
< Mean: 0.00189744
< Std. dev.: 0.00290077
< 2.5% Quantile: 0.000284468
< 10% Quantile: 0.000440268
< 50% Quantile: 0.00111217
< 90% Quantile: 0.00391451
< 97.5% Quantile: 0.00791804
---
> Mean: 0.00199966
> Std. dev.: 0.002788
> 2.5% Quantile: 0.000277306
> 10% Quantile: 0.000443697
> 50% Quantile: 0.00120169
> 90% Quantile: 0.00414527
> 97.5% Quantile: 0.00856249
445,451c447,453
< Mean: 405.824 (df: 3.83565)
< Std. dev.: 316.262
< 2.5% Quantile: 45.5374 (df: 6.34232)
< 10% Quantile: 94.5882 (df: 5.38382)
< 50% Quantile: 319.488 (df: 4.05884)
< 90% Quantile: 806.723 (df: 3.25598)
< 97.5% Quantile: 1267.26 (df: 2.92067)
---
> Mean: 391.278 (df: 3.86896)
> Std. dev.: 324.746
> 2.5% Quantile: 41.605 (df: 6.46957)
> 10% Quantile: 86.314 (df: 5.49696)
> 50% Quantile: 300.189 (df: 4.11889)
> 90% Quantile: 820.361 (df: 3.24291)
> 97.5% Quantile: 1313.51 (df: 2.8955)
Running 'reml.R'
Comparing 'reml.Rout' to 'reml.Rout.save' ...6a7,8
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/temp
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/output
Running 'step.R'
Comparing 'step.Rout' to 'step.Rout.save' ...6a7,8
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/temp
> NOTE: created directory /home/nik/svn/bayesr/pkg/BayesXsrc.Rcheck/tests/output
113c115
< Mean: 0.0413125
---
> Mean: 0.0127105
115,116c117,118
< Minimum: 0.168476
< Maximum: 0.105666
---
> Minimum: 0.155454
> Maximum: 0.127149
126c128
< Mean: 0.0642715
---
> Mean: 0.131794
128,129c130,131
< Minimum: 0.33681
< Maximum: 0.329397
---
> Minimum: 0.377453
> Maximum: 0.296694
139c141
< Mean: 0.850006
---
> Mean: 0.875678
141,142c143,144
< Minimum: 1.57335
< Maximum: 2.59562
---
> Minimum: 1.81419
> Maximum: 3.72164
152,155c154,157
< Mean: 0.00103055
< Variance: 0.0420668
< Minimum: 0.0107179
< Maximum: 0
---
> Mean: 0.0035267
> Variance: 0.0412186
> Minimum: 0.00587859
> Maximum: 0.00517516
165,168c167,170
< Mean: 0.00259305
< Variance: 0.0307123
< Minimum: 0.0330889
< Maximum: 0.0233687
---
> Mean: 0.00699623
> Variance: 0.0263269
> Minimum: 0.0172653
> Maximum: 0.0443969
178,181c180,183
< Mean: 0.0614994
< Variance: 0.0486743
< Minimum: 0.215803
< Maximum: 0.116828
---
> Mean: 0.0559648
> Variance: 0.0115742
> Minimum: 0.212353
> Maximum: 0.0293845
191,193c193,195
< Mean: 0.000509355
< Variance: 0.0251384
< Minimum: 0
---
> Mean: 0.000773709
> Variance: 0.0417637
> Minimum: 0.00545731
204,207c206,209
< Mean: 0.00207084
< Variance: 0.0207203
< Minimum: 0.0327968
< Maximum: 0.0178219
---
> Mean: 0.00315642
> Variance: 0.0222178
> Minimum: 0.00651462
> Maximum: 0.0265861
217,220c219,222
< Mean: 0.044435
< Variance: 0.0296209
< Minimum: 0.0961019
< Maximum: 0.115237
---
> Mean: 0.0155678
> Variance: 0.038029
> Minimum: 0.0251704
> Maximum: 0.0149953
243,249c245,251
< Mean: 1817.7427
< Std. Dev: 5.0237012
< 2.5% Quantile: 1809.9566
< 10% Quantile: 1811.8912
< 50% Quantile: 1817.0106
< 90% Quantile: 1824.5867
< 97.5% Quantile: 1829.6405
---
> Mean: 1817.9364
> Std. Dev: 5.1296588
> 2.5% Quantile: 1810.0401
> 10% Quantile: 1811.7848
> 50% Quantile: 1817.2257
> 90% Quantile: 1824.7163
> 97.5% Quantile: 1829.917
253,259c255,261
< Mean: 1008.9935
< Std. Dev: 5.0237012
< 2.5% Quantile: 1001.2073
< 10% Quantile: 1003.1419
< 50% Quantile: 1008.2613
< 90% Quantile: 1015.8375
< 97.5% Quantile: 1020.8913
---
> Mean: 1009.1872
> Std. Dev: 5.1296588
> 2.5% Quantile: 1001.2909
> 10% Quantile: 1003.0356
> 50% Quantile: 1008.4765
> 90% Quantile: 1015.967
> 97.5% Quantile: 1021.1677
268,270c270,272
< Deviance(bar_mu): 1808.7413
< pD: 9.001442
< DIC: 1826.7442
---
> Deviance(bar_mu): 1808.7997
> pD: 9.1367845
> DIC: 1827.0732
274,276c276,278
< Deviance(bar_mu): 999.99202
< pD: 9.001442
< DIC: 1017.9949
---
> Deviance(bar_mu): 1000.0504
> pD: 9.1367845
> DIC: 1018.324
299,300c301,302
< const 1.41594 0.0378746 1.34528 1.41455 1.49346
< x2 0.756194 0.0636984 0.629613 0.754658 0.875996
---
> const 1.41724 0.0373261 1.33891 1.417 1.48913
> x2 0.754898 0.0646459 0.632207 0.754435 0.889085
Running 'zfileremoves.R'
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.15/BayesXsrc.Rcheck/00check.log'
for details.
- elapsed time (check, wall clock): 11:22