* installing *source* package ‘rts2’ ... ** package ‘rts2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c create_new_models.cpp -o create_new_models.o Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c model_module.cpp -o model_module.o In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c model_module2.cpp -o model_module2.o In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c model_module_extension.cpp -o model_module_extension.o In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_rtsapproxlgcp.cc -o stanExports_rtsapproxlgcp.o In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] int x ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable] double mem = 0; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable] int nz = Ap.back(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] int ncmpa = 0 ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable] int deg, inext, ilast; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] int x ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable] double mem = 0; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable] int nz = Ap.back(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] int ncmpa = 0 ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable] int deg, inext, ilast; ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] int x ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable] double mem = 0; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable] int nz = Ap.back(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] int ncmpa = 0 ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable] int deg, inext, ilast; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable] float a = std::stod(s); ^ 5 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_rtsapproxlgcp_nngp.cc -o stanExports_rtsapproxlgcp_nngp.o In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] int x ; ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable] float a = std::stod(s); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable] double mem = 0; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable] int nz = Ap.back(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] int ncmpa = 0 ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable] int deg, inext, ilast; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from stanExports_rtsapproxlgcp.cc:5: In file included from ./stanExports_rtsapproxlgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_rtsapproxlgcp.cc:5: In file included from ./stanExports_rtsapproxlgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_rtsapproxlgcp.cc:5: In file included from ./stanExports_rtsapproxlgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsapproxlgcp.cc:5: In file included from ./stanExports_rtsapproxlgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsapproxlgcp.cc:5: In file included from ./stanExports_rtsapproxlgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable] float a = std::stod(s); ^ In file included from stanExports_rtsapproxlgcp.cc:5: In file included from ./stanExports_rtsapproxlgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modelbits.hpp:6: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable] double au, av, qf; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable] float a = std::stod(s); ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modelbits.hpp:6: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable] double au, av, qf; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable] double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable] double a = eval(current_values, g); ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_beta(start); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_theta(start); ^ In file included from stanExports_rtsapproxlgcp.cc:5: In file included from ./stanExports_rtsapproxlgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: In file included from ../inst/include/rts/rtsmodeloptim.h:4: In file included from ../inst/include/rts/rtsmodelbits.h:13: ../inst/include/rts/nngpcovariance.h:498:18: warning: unused variable 'qf1' [-Wunused-variable] double au, av, qf1; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: In file included from ../inst/include/rts/rtsmodeloptim.h:4: In file included from ../inst/include/rts/rtsmodelbits.h:15: In file included from ../inst/include/rts/regionlinearpredictor.h:4: ../inst/include/rts/regiondata.h:67:7: warning: unused variable 'nInter' [-Wunused-variable] int nInter, r, t, l, idx1; ^ ../inst/include/rts/regiondata.h:67:24: warning: unused variable 'idx1' [-Wunused-variable] int nInter, r, t, l, idx1; ^ ../inst/include/rts/regiondata.h:115:7: warning: unused variable 'nInter' [-Wunused-variable] int nInter, r, t, l, j, idx1; ^ ../inst/include/rts/regiondata.h:115:27: warning: unused variable 'idx1' [-Wunused-variable] int nInter, r, t, l, j, idx1; ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable] double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable] double a = eval(current_values, g); ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_beta(start); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_theta(start); ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modelbits.hpp:6: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable] double au, av, qf; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: ../inst/include/rts/rtsmodeloptim.h:551:14: warning: unused variable 'logl' [-Wunused-variable] double logl = 0; ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:5: ../inst/include/rts/rtsregionmodel.h:467:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:514:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:561:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:608:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:661:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:714:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: In file included from ../inst/include/rts/rtsmodeloptim.h:4: In file included from ../inst/include/rts/rtsmodelbits.h:13: ../inst/include/rts/nngpcovariance.h:498:18: warning: unused variable 'qf1' [-Wunused-variable] double au, av, qf1; ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: In file included from ../inst/include/rts/rtsmodeloptim.h:4: In file included from ../inst/include/rts/rtsmodelbits.h:15: In file included from ../inst/include/rts/regionlinearpredictor.h:4: ../inst/include/rts/regiondata.h:67:7: warning: unused variable 'nInter' [-Wunused-variable] int nInter, r, t, l, idx1; ^ ../inst/include/rts/regiondata.h:67:24: warning: unused variable 'idx1' [-Wunused-variable] int nInter, r, t, l, idx1; ^ ../inst/include/rts/regiondata.h:115:7: warning: unused variable 'nInter' [-Wunused-variable] int nInter, r, t, l, j, idx1; ^ ../inst/include/rts/regiondata.h:115:27: warning: unused variable 'idx1' [-Wunused-variable] int nInter, r, t, l, j, idx1; ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: ../inst/include/rts/rtsmodeloptim.h:551:14: warning: unused variable 'logl' [-Wunused-variable] double logl = 0; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable] double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable] double a = eval(current_values, g); ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modelbits.hpp:6: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable] double au, av, qf; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_beta(start); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_theta(start); ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:5: ../inst/include/rts/rtsregionmodel.h:467:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:514:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:561:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:608:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:661:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:714:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: In file included from ../inst/include/rts/rtsmodeloptim.h:4: In file included from ../inst/include/rts/rtsmodelbits.h:13: ../inst/include/rts/nngpcovariance.h:498:18: warning: unused variable 'qf1' [-Wunused-variable] double au, av, qf1; ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: In file included from ../inst/include/rts/rtsmodeloptim.h:4: In file included from ../inst/include/rts/rtsmodelbits.h:15: In file included from ../inst/include/rts/regionlinearpredictor.h:4: ../inst/include/rts/regiondata.h:67:7: warning: unused variable 'nInter' [-Wunused-variable] int nInter, r, t, l, idx1; ^ ../inst/include/rts/regiondata.h:67:24: warning: unused variable 'idx1' [-Wunused-variable] int nInter, r, t, l, idx1; ^ ../inst/include/rts/regiondata.h:115:7: warning: unused variable 'nInter' [-Wunused-variable] int nInter, r, t, l, j, idx1; ^ ../inst/include/rts/regiondata.h:115:27: warning: unused variable 'idx1' [-Wunused-variable] int nInter, r, t, l, j, idx1; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable] double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable] double a = eval(current_values, g); ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_beta(start); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_theta(start); ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: ../inst/include/rts/rtsmodeloptim.h:551:14: warning: unused variable 'logl' [-Wunused-variable] double logl = 0; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:5: ../inst/include/rts/rtsregionmodel.h:467:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:514:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:561:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:608:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:661:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:714:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: In file included from ../inst/include/rts/rtsmodeloptim.h:4: In file included from ../inst/include/rts/rtsmodelbits.h:13: ../inst/include/rts/nngpcovariance.h:498:18: warning: unused variable 'qf1' [-Wunused-variable] double au, av, qf1; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: In file included from ../inst/include/rts/rtsmodeloptim.h:4: In file included from ../inst/include/rts/rtsmodelbits.h:15: In file included from ../inst/include/rts/regionlinearpredictor.h:4: ../inst/include/rts/regiondata.h:67:7: warning: unused variable 'nInter' [-Wunused-variable] int nInter, r, t, l, idx1; ^ ../inst/include/rts/regiondata.h:67:24: warning: unused variable 'idx1' [-Wunused-variable] int nInter, r, t, l, idx1; ^ ../inst/include/rts/regiondata.h:115:7: warning: unused variable 'nInter' [-Wunused-variable] int nInter, r, t, l, j, idx1; ^ ../inst/include/rts/regiondata.h:115:27: warning: unused variable 'idx1' [-Wunused-variable] int nInter, r, t, l, j, idx1; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:4: In file included from ../inst/include/rts/rtsmodel.h:11: ../inst/include/rts/rtsmodeloptim.h:551:14: warning: unused variable 'logl' [-Wunused-variable] double logl = 0; ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:5: ../inst/include/rts/rtsregionmodel.h:467:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:514:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:561:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:608:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:661:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ ../inst/include/rts/rtsregionmodel.h:714:7: warning: unused variable 'R' [-Wunused-variable] int R = region.nRegion; ^ In file included from stanExports_rtsapproxlgcp.cc:5: In file included from ./stanExports_rtsapproxlgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_rtsapproxlgcp.cc:5: ./stanExports_rtsapproxlgcp.h:1132:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp.h:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from stanExports_rtsapproxlgcp.cc:5: In file included from ./stanExports_rtsapproxlgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp.h:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp.h:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: ./stanExports_rtsapproxlgcp_nngp.h:1266:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp.h:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from stanExports_rtsapproxlgcp_nngp.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'rts::nngpCovariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function] bobyqa(const INTEGER n, const INTEGER npt, ^ In file included from create_new_models.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field] int iter = 0; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function] bobyqa(const INTEGER n, const INTEGER npt, ^ In file included from model_module.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field] int iter = 0; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from model_module2.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field] int iter = 0; ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function] bobyqa(const INTEGER n, const INTEGER npt, ^ In file included from model_module_extension.cpp:1: In file included from ../inst/include/rtsheader.h:3: In file included from ../inst/include/rts/rtsmaths.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field] int iter = 0; ^ 35 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_rtsapproxlgcp_nngp_region.cc -o stanExports_rtsapproxlgcp_nngp_region.o Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct 35 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_rtsapproxlgcp_region.cc -o stanExports_rtsapproxlgcp_region.o Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from stanExports_rtsapproxlgcp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_rtsapproxlgcp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_rtsapproxlgcp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsapproxlgcp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsapproxlgcp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_rtsapproxlgcp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_rtsapproxlgcp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: ./stanExports_rtsapproxlgcp_nngp_region.h:1586:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from stanExports_rtsapproxlgcp_nngp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_nngp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from stanExports_rtsapproxlgcp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_rtsapproxlgcp_region.cc:5: ./stanExports_rtsapproxlgcp_region.h:1429:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from stanExports_rtsapproxlgcp_region.cc:5: In file included from ./stanExports_rtsapproxlgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ 11 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_rtslgcp.cc -o stanExports_rtslgcp.o Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) 11 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_rtslgcp_region.cc -o stanExports_rtslgcp_region.o Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from stanExports_rtslgcp.cc:5: In file included from ./stanExports_rtslgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_rtslgcp.cc:5: In file included from ./stanExports_rtslgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_rtslgcp.cc:5: In file included from ./stanExports_rtslgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtslgcp.cc:5: In file included from ./stanExports_rtslgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtslgcp.cc:5: In file included from ./stanExports_rtslgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_rtslgcp.cc:5: In file included from ./stanExports_rtslgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_rtslgcp.cc:5: In file included from ./stanExports_rtslgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from stanExports_rtslgcp_region.cc:5: In file included from ./stanExports_rtslgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_rtslgcp_region.cc:5: In file included from ./stanExports_rtslgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_rtslgcp_region.cc:5: In file included from ./stanExports_rtslgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtslgcp_region.cc:5: In file included from ./stanExports_rtslgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtslgcp_region.cc:5: In file included from ./stanExports_rtslgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_rtslgcp_region.cc:5: In file included from ./stanExports_rtslgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_rtslgcp_region.cc:5: In file included from ./stanExports_rtslgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct 36 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_rtsmcml_poisson.cc -o stanExports_rtsmcml_poisson.o Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from stanExports_rtslgcp.cc:5: In file included from ./stanExports_rtslgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_rtslgcp.cc:5: ./stanExports_rtslgcp.h:1035:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from stanExports_rtsmcml_poisson.cc:5: In file included from ./stanExports_rtsmcml_poisson.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_rtsmcml_poisson.cc:5: In file included from ./stanExports_rtsmcml_poisson.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_rtsmcml_poisson.cc:5: In file included from ./stanExports_rtsmcml_poisson.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsmcml_poisson.cc:5: In file included from ./stanExports_rtsmcml_poisson.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtslgcp.cc:5: In file included from ./stanExports_rtslgcp.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from stanExports_rtsmcml_poisson.cc:5: In file included from ./stanExports_rtsmcml_poisson.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_rtsmcml_poisson.cc:5: In file included from ./stanExports_rtsmcml_poisson.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_rtslgcp_region.cc:5: In file included from ./stanExports_rtslgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_rtslgcp_region.cc:5: ./stanExports_rtslgcp_region.h:1343:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from stanExports_rtsmcml_poisson.cc:5: In file included from ./stanExports_rtsmcml_poisson.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from stanExports_rtslgcp_region.cc:5: In file included from ./stanExports_rtslgcp_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ 34 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_rtsmcml_poisson_region.cc -o stanExports_rtsmcml_poisson_region.o Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) In file included from stanExports_rtsmcml_poisson_region.cc:5: In file included from ./stanExports_rtsmcml_poisson_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_rtsmcml_poisson_region.cc:5: In file included from ./stanExports_rtsmcml_poisson_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_rtsmcml_poisson_region.cc:5: In file included from ./stanExports_rtsmcml_poisson_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsmcml_poisson_region.cc:5: In file included from ./stanExports_rtsmcml_poisson_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_rtsmcml_poisson_region.cc:5: In file included from ./stanExports_rtsmcml_poisson_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_rtsmcml_poisson_region.cc:5: In file included from ./stanExports_rtsmcml_poisson_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_rtsmcml_poisson_region.cc:5: In file included from ./stanExports_rtsmcml_poisson_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from stanExports_rtsmcml_poisson.cc:5: In file included from ./stanExports_rtsmcml_poisson.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_rtsmcml_poisson.cc:5: ./stanExports_rtsmcml_poisson.h:300:20: warning: unused variable 'jacobian__' [-Wunused-variable] constexpr bool jacobian__ = false; ^ ./stanExports_rtsmcml_poisson.h:350:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from stanExports_rtsmcml_poisson.cc:5: In file included from ./stanExports_rtsmcml_poisson.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from stanExports_rtsmcml_poisson_region.cc:5: In file included from ./stanExports_rtsmcml_poisson_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_rtsmcml_poisson_region.cc:5: ./stanExports_rtsmcml_poisson_region.h:436:20: warning: unused variable 'jacobian__' [-Wunused-variable] constexpr bool jacobian__ = false; ^ ./stanExports_rtsmcml_poisson_region.h:486:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from stanExports_rtsmcml_poisson_region.cc:5: In file included from ./stanExports_rtsmcml_poisson_region.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ 11 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c variogram.cpp -o variogram.o In file included from variogram.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from variogram.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from variogram.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from variogram.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 5 warnings generated. 11 warnings generated. 11 warnings generated. 12 warnings generated. 11 warnings generated. 12 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o rts2.so RcppExports.o create_new_models.o model_module.o model_module2.o model_module_extension.o stanExports_rtsapproxlgcp.o stanExports_rtsapproxlgcp_nngp.o stanExports_rtsapproxlgcp_nngp_region.o stanExports_rtsapproxlgcp_region.o stanExports_rtslgcp.o stanExports_rtslgcp_region.o stanExports_rtsmcml_poisson.o stanExports_rtsmcml_poisson_region.o variogram.o -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/lib/ -Wl,-rpath,/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/lib/ -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/rts2.Rcheck/00LOCK-rts2/00new/rts2/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rts2)