* installing *source* package ‘glmmrOptim’ ... ** package ‘glmmrOptim’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rminqa/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rminqa/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gd_search.cpp -o gd_search.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/rminqa/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c openmp_utils.cpp -o openmp_utils.o In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:4In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ : In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] int x ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable] double mem = 0; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable] int nz = Ap.back(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] int ncmpa = 0 ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable] int deg, inext, ilast; ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] int x ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable] double mem = 0; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable] int nz = Ap.back(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] int ncmpa = 0 ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable] int deg, inext, ilast; ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] int x ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable] double mem = 0; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable] int nz = Ap.back(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] int ncmpa = 0 ; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable] int deg, inext, ilast; ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/SparseChol.h:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] double val; ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable] float a = std::stod(s); ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable] float a = std::stod(s); ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable] float a = std::stod(s); ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modelbits.hpp:6: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable] double au, av, qf; ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modelbits.hpp:6: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable] double au, av, qf; ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modelbits.hpp:6: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable] double au, av, qf; ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable] double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable] double a = eval(current_values, g); ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_beta(start); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_theta(start); ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable] double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable] double a = eval(current_values, g); ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_beta(start); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_theta(start); ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable] double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable] double a = eval(current_values, g); ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_beta(start); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable] double old_ll = log_likelihood_theta(start); ^ In file included from gd_search.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: ../inst/include/optim/optimderivatives.h:20:9: warning: unused variable 'curr_size' [-Wunused-variable] int curr_size = FirstOrderDerivatives.size(); ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: ../inst/include/optim/optimderivatives.h:20:9: warning: unused variable 'curr_size' [-Wunused-variable] int curr_size = FirstOrderDerivatives.size(); ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: ../inst/include/optim/optimderivatives.h:20:9: warning: unused variable 'curr_size' [-Wunused-variable] int curr_size = FirstOrderDerivatives.size(); ^ openmp_utils.cpp:19:8: warning: variable 'a' set but not used [-Wunused-but-set-variable] int a, b; // needed for defines on machines without openmp ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/general.h:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp.h:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp.h:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp.h:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer>>' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Covariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here void Finalizer(T*) = standard_delete_finalizer, ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function] bobyqa(const INTEGER n, const INTEGER npt, ^ In file included from gd_search.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field] int iter = 0; ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function] bobyqa(const INTEGER n, const INTEGER npt, ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field] int iter = 0; ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function] bobyqa(const INTEGER n, const INTEGER npt, ^ In file included from openmp_utils.cpp:2: In file included from ../inst/include/glmmrOptim.h:6: In file included from ../inst/include/optim/optimclass.h:8: In file included from ../inst/include/optim/optimderivatives.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr.h:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/model.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/modeloptim.hpp:12: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field] int iter = 0; ^ 25 warnings generated. 24 warnings generated. 25 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o glmmrOptim.so RcppExports.o gd_search.o openmp_utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/glmmrOptim.Rcheck/00LOCK-glmmrOptim/00new/glmmrOptim/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmmrOptim)