* installing *source* package ‘compositions’ ... ** package ‘compositions’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c compositions.c -o compositions.o compositions.c:210:15: warning: unused variable 'D2' [-Wunused-variable] const int D2=D*D; // size of a error matrix ^ compositions.c:215:16: warning: unused variable 'transA' [-Wunused-variable] const char transA='N'; // for BLAS ^ compositions.c:216:16: warning: unused variable 'transB' [-Wunused-variable] const char transB='T'; // for BLAS ^ compositions.c:218:18: warning: unused variable 'zero' [-Wunused-variable] const double zero=0.0; // for BLAS ^ compositions.c:219:18: warning: unused variable 'one' [-Wunused-variable] const double one =1.0; // for BLAS ^ compositions.c:451:15: warning: unused variable 'D2' [-Wunused-variable] const int D2=D*D; // size of a error matrix ^ compositions.c:454:15: warning: unused variable 'ldN' [-Wunused-variable] const int ldN=*ldNp; //MaxFramesize of central matrix ^ compositions.c:457:16: warning: unused variable 'transA' [-Wunused-variable] const char transA='N'; // for BLAS ^ compositions.c:458:16: warning: unused variable 'transB' [-Wunused-variable] const char transB='T'; // for BLAS ^ compositions.c:463:11: warning: variable 'l' set but not used [-Wunused-but-set-variable] int k,l; // actual matrix position ^ compositions.c:567:16: warning: unused variable 'transA' [-Wunused-variable] const char transA='N'; // for BLAS ^ compositions.c:568:16: warning: unused variable 'transB' [-Wunused-variable] const char transB='T'; // for BLAS ^ compositions.c:580:16: warning: unused variable 'uplo' [-Wunused-variable] const char uplo='U'; // for LAPACK ^ compositions.c:1066:15: warning: unused variable 'DDn' [-Wunused-variable] const int DDn=D*D*n; // step in imputationCache to get second type of info ^ compositions.c:1068:10: warning: unused variable 'transA' [-Wunused-variable] char transA='N'; // parameter for dgelsd ^ compositions.c:1248:10: warning: unused variable 'transA' [-Wunused-variable] char transA='N'; // for dgemv ^ compositions.c:1511:8: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses] ?imputationCache[DD*type+i+D*j] ^ compositions.c:1511:8: note: place parentheses around the '+' expression to silence this warning ?imputationCache[DD*type+i+D*j] ^ compositions.c:1511:8: note: place parentheses around the '?:' expression to evaluate it first ?imputationCache[DD*type+i+D*j] ^ compositions.c:1433:10: warning: unused variable 'transA' [-Wunused-variable] char transA='N'; // for dgemv ^ compositions.c:1434:10: warning: unused variable 'transAt' [-Wunused-variable] char transAt='T'; // for dgemv ^ compositions.c:1757:13: warning: unused variable 'xv' [-Wunused-variable] double xv = MX(c,l); ^ compositions.c:1735:16: warning: unused variable 'transA' [-Wunused-variable] const char transA='N'; ^ compositions.c:1919:6: warning: unused variable 'idx' [-Wunused-variable] int idx=i+N*j; ^ compositions.c:1870:9: warning: unused variable 'p' [-Wunused-variable] int p=dimX[1]; ^ compositions.c:1871:9: warning: unused variable 'NmissingTypes' [-Wunused-variable] int NmissingTypes=0; ^ compositions.c:1876:13: warning: unused variable 'dl' [-Wunused-variable] double *dl=(double *) R_alloc(N*D,sizeof(double)); ^ compositions.c:1998:6: warning: unused variable 'idx' [-Wunused-variable] int idx=i+N*j; ^ compositions.c:1945:9: warning: unused variable 'p' [-Wunused-variable] int p=dimX[1]; ^ compositions.c:1946:9: warning: unused variable 'NmissingTypes' [-Wunused-variable] int NmissingTypes=0; ^ compositions.c:1951:13: warning: unused variable 'dl' [-Wunused-variable] double *dl=(double *) R_alloc(N*D,sizeof(double)); ^ compositions.c:1973:13: warning: unused variable 'imputationCache' [-Wunused-variable] double *imputationCache=(double *) R_alloc(D*D*nTypes*2,sizeof(double)); ^ compositions.c:2083:13: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ compositions.c:2372:12: warning: unused variable 'Pd' [-Wunused-variable] double Pd=sqrt(M_PI*sigmaQ); ^ compositions.c:2479:13: warning: unused variable 'k' [-Wunused-variable] int i,j,k,r; ^ compositions.c:2484:9: warning: unused variable 'D' [-Wunused-variable] int D=dimX[1]; ^ compositions.c:2485:10: warning: unused variable 'tmpIntPtr' [-Wunused-variable] int *tmpIntPtr; ^ compositions.c:2486:9: warning: unused variable 'tmpInt' [-Wunused-variable] int tmpInt; ^ compositions.c:2487:13: warning: unused variable 'tmpDoublePtr' [-Wunused-variable] double *tmpDoublePtr; ^ compositions.c:2489:12: warning: unused variable 'tmp' [-Wunused-variable] double tmp; ^ 38 warnings generated. clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o compositions.so compositions.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/compositions.Rcheck/00LOCK-compositions/00new/compositions/libs ** generating debug symbols (dSYM) ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (compositions)