* installing *source* package ‘bcf’ ... ** package ‘bcf’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c TreeSamples.cpp -o TreeSamples.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c bcf_clean.cpp -o bcf_clean.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c bcf_clean_overpar.cpp -o bcf_clean_overpar.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c bd.cpp -o bd.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c funs.cpp -o funs.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c logging.cpp -o logging.o bcf_clean_overpar.cpp:106:3: warning: '/*' within block comment [-Wcomment] /* Read, format y ^ bcf_clean_overpar.cpp:126:3: warning: '/*' within block comment [-Wcomment] /* Read, format weights ^ bcf_clean_overpar.cpp:137:3: warning: '/*' within block comment [-Wcomment] /* Read, format X_con ^ bcf_clean_overpar.cpp:162:3: warning: '/*' within block comment [-Wcomment] /* Read, format X_mod ^ bcf_clean_overpar.cpp:193:3: warning: '/*' within block comment [-Wcomment] /* Setup the model ^ funs.cpp:279:16: warning: unused variable 'tbn' [-Wunused-variable] tree::tree_cp tbn; //the pointer to the bottom node for the current observations ^ funs.cpp:280:9: warning: unused variable 'ni' [-Wunused-variable] size_t ni; //the index into vector of the current bottom node ^ funs.cpp:281:10: warning: unused variable 'xx' [-Wunused-variable] double *xx; //current x ^ funs.cpp:282:9: warning: unused variable 'y' [-Wunused-variable] double y; //current y ^ funs.cpp:318:9: warning: variable 'y' set but not used [-Wunused-but-set-variable] double y; //current y ^ funs.cpp:324:7: warning: unused variable 'nb' [-Wunused-variable] bvsz nb = bnv.size(); ^ funs.cpp:351:9: warning: variable 'y' set but not used [-Wunused-but-set-variable] double y; //current y ^ funs.cpp:354:7: warning: unused variable 'nb' [-Wunused-variable] bvsz nb = bnv.size(); ^ funs.cpp:376:9: warning: variable 'y' set but not used [-Wunused-but-set-variable] double y; //current y ^ funs.cpp:404:10: warning: variable 'y' set but not used [-Wunused-but-set-variable] double y; //current y ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c rng.cpp -o rng.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c tree.cpp -o tree.o 10 warnings generated. tree.cpp:596:9: warning: variable 'pid' set but not used [-Wunused-but-set-variable] size_t pid; ^ tree.cpp:636:9: warning: variable 'pid' set but not used [-Wunused-but-set-variable] size_t pid; ^ 5 warnings generated. 2 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o bcf.so RcppExports.o TreeSamples.o bcf_clean.o bcf_clean_overpar.o bd.o funs.o logging.o rng.o tree.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation /Volumes/Builds/packages/big-sur-x86_64/results/4.4/bcf.Rcheck/00_pkg_src/bcf/src/bcf_clean.o: no symbols installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/bcf.Rcheck/00LOCK-bcf/00new/bcf/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bcf)