* installing *source* package ‘Rtwobitlib’ ...
** package ‘Rtwobitlib’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
cd "kent" && make -f "Makefile.Rtwobitlib"
mkdir -p "/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent"
mkdir -p "/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/usrlib"
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 common.c -o common.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 localmem.c -o localmem.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 errAbort.c -o errAbort.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 hash.c -o hash.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 bits.c -o bits.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 cheapcgi.c -o cheapcgi.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 linefile.c -o linefile.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 obscure.c -o obscure.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 dnautil.c -o dnautil.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 dnaseq.c -o dnaseq.o
clang -arch x86_64 -c -falign-functions=64 -Wall -g -O2 -fpic -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -D_FILE_OFFSET_BITS=64 twoBit.c -o twoBit.o
ar -rc libtwobit.a common.o localmem.o errAbort.o hash.o bits.o cheapcgi.o linefile.o obscure.o dnautil.o dnaseq.o twoBit.o
ranlib libtwobit.a
cd "kent" && cp *.h "/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent"
cd "kent" && cp libtwobit.a "/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/usrlib"
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_Rtwobitlib.c -o R_init_Rtwobitlib.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Rtwobitlib_utils.c -o Rtwobitlib_utils.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c twobit_roundtrip.c -o twobit_roundtrip.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c twobit_seqstats.c -o twobit_seqstats.o
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o Rtwobitlib.so R_init_Rtwobitlib.o Rtwobitlib_utils.o twobit_roundtrip.o twobit_seqstats.o /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/usrlib/libtwobit.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
cd "kent" && make -f "Makefile.Rtwobitlib"
mkdir -p "/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent"
make[1]: Nothing to be done for `all'.
cd "kent" && cp *.h "/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent"
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_Rtwobitlib.c -o R_init_Rtwobitlib.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Rtwobitlib_utils.c -o Rtwobitlib_utils.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c twobit_roundtrip.c -o twobit_roundtrip.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c twobit_seqstats.c -o twobit_seqstats.o
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00LOCK-Rtwobitlib/00new/Rtwobitlib/libs
** generating debug symbols (dSYM)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00_pkg_src/Rtwobitlib/src/R_init_Rtwobitlib.o: timestamp mismatch between object file (2024-04-24 14:27:18.649733680) and debug map (2024-04-24 14:27:16.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00_pkg_src/Rtwobitlib/src/Rtwobitlib_utils.o: timestamp mismatch between object file (2024-04-24 14:27:18.687613501) and debug map (2024-04-24 14:27:16.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00_pkg_src/Rtwobitlib/src/twobit_roundtrip.o: timestamp mismatch between object file (2024-04-24 14:27:18.733470506) and debug map (2024-04-24 14:27:16.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00_pkg_src/Rtwobitlib/src/twobit_seqstats.o: timestamp mismatch between object file (2024-04-24 14:27:18.732839957) and debug map (2024-04-24 14:27:16.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00_pkg_src/Rtwobitlib/src/R_init_Rtwobitlib.o: timestamp mismatch between object file (2024-04-24 14:27:18.649733680) and debug map (2024-04-24 14:27:16.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00_pkg_src/Rtwobitlib/src/Rtwobitlib_utils.o: timestamp mismatch between object file (2024-04-24 14:27:18.687613501) and debug map (2024-04-24 14:27:16.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00_pkg_src/Rtwobitlib/src/twobit_roundtrip.o: timestamp mismatch between object file (2024-04-24 14:27:18.733470506) and debug map (2024-04-24 14:27:16.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Rtwobitlib.Rcheck/00_pkg_src/Rtwobitlib/src/twobit_seqstats.o: timestamp mismatch between object file (2024-04-24 14:27:18.732839957) and debug map (2024-04-24 14:27:16.000000000)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rtwobitlib)