* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.4/sf.Rcheck’
* using R version 4.4.0 alpha (2024-03-31 r86238)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.4
* using session charset: UTF-8
* checking for file ‘sf/DESCRIPTION’ ... OK
* this is package ‘sf’ version ‘1.0-16’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sf’ can be installed ... [82s/85s] OK
See 'https://www.r-project.org/nosvn/R.check/r-release-macos-arm64/sf-00install.html' for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... NOTE
  installed size is 261.4Mb
  sub-directories of 1Mb or more:
    doc       1.7Mb
    libs    255.1Mb
    sqlite    1.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/8s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [8s/8s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [43s/47s] OK
  Running ‘aggregate.R’ [1s/1s]
  Comparing ‘aggregate.Rout’ to ‘aggregate.Rout.save’ ...4c4
< Linking to GEOS 3.11.0, GDAL 3.5.3, PROJ 9.1.0; sf_use_s2() is TRUE
---
> Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE
  Running ‘cast.R’ [1s/1s]
  Comparing ‘cast.Rout’ to ‘cast.Rout.save’ ... OK
  Running ‘crs.R’ [1s/1s]
  Comparing ‘crs.Rout’ to ‘crs.Rout.save’ ... OK
  Running ‘dist.R’ [1s/1s]
  Comparing ‘dist.Rout’ to ‘dist.Rout.save’ ... OK
  Running ‘dplyr.R’ [1s/1s]
  Comparing ‘dplyr.Rout’ to ‘dplyr.Rout.save’ ...125a126
> [1] 4
  Running ‘empty.R’ [0s/1s]
  Comparing ‘empty.Rout’ to ‘empty.Rout.save’ ... OK
  Running ‘gdal_geom.R’ [1s/1s]
  Comparing ‘gdal_geom.Rout’ to ‘gdal_geom.Rout.save’ ... OK
  Running ‘geos.R’ [10s/10s]
  Comparing ‘geos.Rout’ to ‘geos.Rout.save’ ... OK
  Running ‘graticule.R’ [2s/2s]
  Comparing ‘graticule.Rout’ to ‘graticule.Rout.save’ ... OK
  Running ‘grid.R’ [1s/1s]
  Comparing ‘grid.Rout’ to ‘grid.Rout.save’ ... OK
  Running ‘maps.R’ [1s/1s]
  Comparing ‘maps.Rout’ to ‘maps.Rout.save’ ... OK
  Running ‘plot.R’ [5s/5s]
  Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
  Running ‘read.R’ [1s/1s]
  Comparing ‘read.Rout’ to ‘read.Rout.save’ ...187,189c187,254
< Warning message:
< In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
<   there is no package called 'RSQLite'
---
> Simple feature collection with 155 features and 13 fields
> Geometry type: POINT
> Dimension:     XY
> Bounding box:  xmin: 178605 ymin: 329714 xmax: 181390 ymax: 333611
> CRS:           NA
> First 3 features:
>   ogc_fid cadmium copper lead zinc  elev       dist   om ffreq soil lime
> 1       1    11.7     85  299 1022 7.909 0.00135803 13.6     1    1    1
> 2       2     8.6     81  277 1141 6.983 0.01222430 14.0     1    1    1
> 3       3     6.5     68  199  640 7.800 0.10302900 13.0     1    1    1
>   landuse dist.m              GEOMETRY
> 1      Ah     50 POINT (181072 333611)
> 2      Ah     30 POINT (181025 333558)
> 3      Ah    150 POINT (181165 333537)
> Simple feature collection with 100 features and 15 fields
> Geometry type: MULTIPOLYGON
> Dimension:     XY
> Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
> CRS:           NA
> First 3 features:
>   ogc_fid  area perimeter cnty_ cnty_id      name  fips fipsno cress_id bir74
> 1       1 0.114     1.442  1825    1825      Ashe 37009  37009        5  1091
> 2       2 0.061     1.231  1827    1827 Alleghany 37005  37005        3   487
> 3       3 0.143     1.630  1828    1828     Surry 37171  37171       86  3188
>   sid74 nwbir74 bir79 sid79 nwbir79                       GEOMETRY
> 1     1      10  1364     0      19 MULTIPOLYGON (((-81.47276 3...
> 2     0      10   542     3      12 MULTIPOLYGON (((-81.23989 3...
> 3     5     208  3616     6     260 MULTIPOLYGON (((-80.45634 3...
> Integer64 values larger than 9.0072e+15 lost significance after conversion to double;
> use argument int64_as_string = TRUE to import them lossless, as character
> Simple feature collection with 1 feature and 2 fields
> Geometry type: POINT
> Dimension:     XY
> Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
> CRS:           NA
>   a       bigint    GEOMETRY
> 1 1 4.611686e+18 POINT (0 1)
> Simple feature collection with 1 feature and 2 fields
> Geometry type: POINT
> Dimension:     XY
> Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
> CRS:           NA
>   a              bigint    GEOMETRY
> 1 1 4611686018427387904 POINT (0 1)
> Simple feature collection with 10 features and 2 fields
> Geometry type: LINESTRING
> Dimension:     XY
> Bounding box:  xmin: 645003 ymin: 4822568 xmax: 748805.6 ymax: 4992001
> Projected CRS: WGS 84 / UTM zone 32N
> First 1 features:
>   PK_UID    Name                       Geometry
> 1      1 Unknown LINESTRING (668540.7 485826...
> Simple feature collection with 8101 features and 6 fields
> Geometry type: POINT
> Dimension:     XY
> Bounding box:  xmin: 319224 ymin: 3934674 xmax: 1308585 ymax: 5214373
> Projected CRS: WGS 84 / UTM zone 32N
> First 1 features:
>   PK_UID    Name Peoples LocalCounc County Region                 Geometry
> 1      1 Brozolo     435          1      0      0 POINT (427002.8 4996361)
> Simple feature collection with 10 features and 2 fields
> Geometry type: MULTIPOLYGON
> Dimension:     XY
> Bounding box:  xmin: 378359.8 ymin: 4198234 xmax: 1211486 ymax: 5036803
> Projected CRS: WGS 84 / UTM zone 32N
> First 1 features:
>   PK_UID   Name                       Geometry
> 1      1 VENETO MULTIPOLYGON (((752912.3 50...
209a275,279
> Warning messages:
> 1: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet,  :
>   GDAL Message 1: Field with same name (identifier) already exists in (PointTimeSeriesObservation). Skipping newer ones
> 2: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet,  :
>   GDAL Message 1: Field with same name (name) already exists in (PointTimeSeriesObservation). Skipping newer ones
  Running ‘roundtrip.R’ [1s/1s]
  Comparing ‘roundtrip.Rout’ to ‘roundtrip.Rout.save’ ... OK
  Running ‘s2.R’ [1s/1s]
  Comparing ‘s2.Rout’ to ‘s2.Rout.save’ ... OK
  Running ‘sample.R’ [0s/0s]
  Comparing ‘sample.Rout’ to ‘sample.Rout.save’ ... OK
  Running ‘sfc.R’ [5s/6s]
  Comparing ‘sfc.Rout’ to ‘sfc.Rout.save’ ...335c335
< "3.11.0"  "3.5.3"  "9.1.0" 
---
> "3.12.1"  "3.8.4"  "9.3.1" 
  Running ‘sfg.R’ [0s/0s]
  Comparing ‘sfg.Rout’ to ‘sfg.Rout.save’ ... OK
  Running ‘spatstat.R’ [1s/1s]
  Comparing ‘spatstat.Rout’ to ‘spatstat.Rout.save’ ...112a113,149
> spatstat.geom 3.2-9
> spatstat.random 3.2-3
> Simple feature collection with 51 features and 1 field
> Geometry type: GEOMETRY
> Dimension:     XY
> Bounding box:  xmin: 123829.8 ymin: 14740.06 xmax: 930518.6 ymax: 318255.5
> CRS:           NA
> First 10 features:
>     label                           geom
> 1  window MULTIPOLYGON (((886135.8 31...
> 2   point      POINT (339121.1 257811.6)
> 3   point      POINT (827440.4 246568.3)
> 4   point      POINT (451339.2 207943.6)
> 5   point      POINT (268749.7 203323.4)
> 6   point      POINT (516676.5 198556.1)
> 7   point        POINT (692366 238643.1)
> 8   point      POINT (843278.5 287241.6)
> 9   point      POINT (648477.7 235466.6)
> 10  point        POINT (852593 267248.3)
> Error in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon,  : 
>   rthomas is not an exported function from spatstat.random.
> Error in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon,  : 
>   The spatstat function rThomas did not return a valid result. Consult the help file.
> Error message from spatstat:
> Error in spatstat_fun(..., win = spatstat.geom::as.owin(x)) : 
>   argument "scale" is missing, with no default
> 
> Error : Only projected coordinates may be converted to spatstat class objects
> Error in `marks<-.ppp`(`*tmp*`, value = value) : 
>   number of rows of data frame != number of points
> In addition: Warning message:
> In as.ppp.sf(sf) : only first attribute column is used for marks
> Error : Only projected coordinates may be converted to spatstat class objects
> [1] TRUE
> Warning message:
> In st_as_sfc.owin(spatstat.geom::as.owin(x)) :
>   The spatstat object has an measurement unit multiplier != 1. Consider rescaling before converting.
  Running ‘stars.R’ [2s/2s]
  Comparing ‘stars.Rout’ to ‘stars.Rout.save’ ...107c107
< Geodetic CRS:  WGS 84
---
> Geodetic CRS:  WGS 84 (CRS84)
118c118
< Geodetic CRS:  WGS 84
---
> Geodetic CRS:  WGS 84 (CRS84)
  Running ‘testthat.R’ [7s/8s]
  Running ‘units.R’ [1s/1s]
  Comparing ‘units.Rout’ to ‘units.Rout.save’ ... OK
  Running ‘wkb.R’ [0s/0s]
  Comparing ‘wkb.Rout’ to ‘wkb.Rout.save’ ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [28s/31s] OK
* checking PDF version of manual ... [6s/6s] OK
* DONE
Status: 1 NOTE
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 3:33