Check results for 'tsDyn'

using R version 3.0.1 (2013-05-16)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘tsDyn/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘tsDyn’ version ‘0.9-2’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘tsDyn’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... WARNING
checkRd: (3) lstar.Rd:8-11: \synopsis will be removed in R 3.1.0
checkRd: (3) setar.Rd:9-11: \synopsis will be removed in R 3.1.0
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking examples ... [32s/32s] OK
checking for unstated dependencies in tests ... OK
checking tests ... [45s/45s] OK
Running ‘00SetarAndFriends.R’ [4s/4s]
Comparing ‘00SetarAndFriends.Rout’ to ‘00SetarAndFriends.Rout.save’ ...4,6c4,11
< This is mgcv 1.7-24. For overview type 'help("mgcv-package")'.
< Warning message:
< In initDefaultClusterOptions(libname) : NAs introduced by coercion
---
> This is mgcv 1.7-22. For overview type 'help("mgcv-package")'.
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:stats':
>
> toeplitz
>
Running ‘TVECM.sim.R’ [3s/3s]
Comparing ‘TVECM.sim.Rout’ to ‘TVECM.sim.Rout.save’ ...4,6c4,11
< This is mgcv 1.7-24. For overview type 'help("mgcv-package")'.
< Warning message:
< In initDefaultClusterOptions(libname) : NAs introduced by coercion
---
> This is mgcv 1.7-22. For overview type 'help("mgcv-package")'.
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:stats':
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> toeplitz
>
Running ‘TVECM_HSTEST.R’ [4s/4s]
Comparing ‘TVECM_HSTEST.Rout’ to ‘TVECM_HSTEST.Rout.save’ ...4,6c4,11
< This is mgcv 1.7-24. For overview type 'help("mgcv-package")'.
< Warning message:
< In initDefaultClusterOptions(libname) : NAs introduced by coercion
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> This is mgcv 1.7-22. For overview type 'help("mgcv-package")'.
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> Attaching package: 'Matrix'
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> The following object(s) are masked from 'package:stats':
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> toeplitz
>
Running ‘VAR.R’ [3s/3s]
Comparing ‘VAR.Rout’ to ‘VAR.Rout.save’ ...4,6c4,11
< This is mgcv 1.7-24. For overview type 'help("mgcv-package")'.
< Warning message:
< In initDefaultClusterOptions(libname) : NAs introduced by coercion
---
> This is mgcv 1.7-22. For overview type 'help("mgcv-package")'.
>
> Attaching package: 'Matrix'
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> The following object(s) are masked from 'package:stats':
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> toeplitz
>
Running ‘VECM.R’ [6s/6s]
Comparing ‘VECM.Rout’ to ‘VECM.Rout.save’ ...4,6c4,11
< This is mgcv 1.7-24. For overview type 'help("mgcv-package")'.
< Warning message:
< In initDefaultClusterOptions(libname) : NAs introduced by coercion
---
> This is mgcv 1.7-22. For overview type 'help("mgcv-package")'.
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> Attaching package: 'Matrix'
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> The following object(s) are masked from 'package:stats':
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> toeplitz
>
Running ‘compare_tsDyn_vars.R’ [5s/5s]
Comparing ‘compare_tsDyn_vars.Rout’ to ‘compare_tsDyn_vars.Rout.save’ ...5,7c5,12
< This is mgcv 1.7-24. For overview type 'help("mgcv-package")'.
< Warning message:
< In initDefaultClusterOptions(libname) : NAs introduced by coercion
---
> This is mgcv 1.7-22. For overview type 'help("mgcv-package")'.
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:stats':
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> toeplitz
>
12c17
< The following object is masked from 'package:base':
---
> The following object(s) are masked from 'package:base':
71c76
< [2] "Mean relative difference: 1.830199e-08"
---
> [2] "Mean relative difference: 1.830196e-08"
75c80
< [6] "Mean relative difference: 1.551177e-08"
---
> [6] "Mean relative difference: 1.551162e-08"
96,97c101,102
< [5] "Mean relative difference: 2.717637e-08"
< [6] "Mean relative difference: 1.916822e-08"
---
> [5] "Mean relative difference: 2.719027e-08"
> [6] "Mean relative difference: 1.916757e-08"
Running ‘lstar.R’ [9s/9s]
Comparing ‘lstar.Rout’ to ‘lstar.Rout.save’ ...4,6c4,11
< This is mgcv 1.7-24. For overview type 'help("mgcv-package")'.
< Warning message:
< In initDefaultClusterOptions(libname) : NAs introduced by coercion
---
> This is mgcv 1.7-22. For overview type 'help("mgcv-package")'.
>
> Attaching package: 'Matrix'
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> The following object(s) are masked from 'package:stats':
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> toeplitz
>
65c70
< const1 0.489101 0.204915 2.3868 0.0169935 *
---
> const1 0.489101 0.204914 2.3869 0.0169929 *
68,72c73,77
< const2 -1.024076 2.430098 -0.4214 0.6734533
< phi2.1 0.423267 0.172146 2.4588 0.0139417 *
< phi2.2 -0.254609 0.585422 -0.4349 0.6636244
< gamma 11.153834 10.004788 1.1148 0.2649149
< th 3.339199 0.092749 36.0024 < 2.2e-16 ***
---
> const2 -1.024076 2.430067 -0.4214 0.6734493
> phi2.1 0.423267 0.172146 2.4588 0.0139415 *
> phi2.2 -0.254609 0.585416 -0.4349 0.6636208
> gamma 11.153834 10.004737 1.1149 0.2649124
> th 3.339199 0.092748 36.0030 < 2.2e-16 ***
147,152c152,157
< const1 0.288460 0.246037 1.1724 0.2410
< phi1.1 0.928029 0.094170 9.8549 <2e-16 ***
< const2 -0.672632 1.336363 -0.5033 0.6147
< phi2.1 0.133119 0.384826 0.3459 0.7294
< gamma 100.003135 93.728989 1.0669 0.2860
< th 3.235652 0.021024 153.9038 <2e-16 ***
---
> const1 0.288460 0.246039 1.1724 0.2410
> phi1.1 0.928029 0.094171 9.8547 <2e-16 ***
> const2 -0.672632 1.336549 -0.5033 0.6148
> phi2.1 0.133119 0.384879 0.3459 0.7294
> gamma 100.003135 93.792934 1.0662 0.2863
> th 3.235652 0.021034 153.8282 <2e-16 ***
226,231c231,236
< phi1.1 1.40051 0.17405 8.0465 8.882e-16 ***
< phi1.2 -0.22537 0.21245 -1.0608 0.288778
< phi2.1 0.76605 0.31698 2.4167 0.015661 *
< phi2.2 -1.05528 0.38300 -2.7553 0.005863 **
< gamma 2.45691 1.31198 1.8727 0.061114 .
< th 2.70784 0.15801 17.1375 < 2.2e-16 ***
---
> phi1.1 1.40051 0.17418 8.0406 8.882e-16 ***
> phi1.2 -0.22537 0.21261 -1.0600 0.289142
> phi2.1 0.76605 0.31715 2.4154 0.015717 *
> phi2.2 -1.05528 0.38318 -2.7540 0.005887 **
> gamma 2.45691 1.30651 1.8805 0.060039 .
> th 2.70784 0.15844 17.0908 < 2.2e-16 ***
305,312c310,317
< trend1 1.8252e-05 1.6342e-03 0.0112 0.991089
< phi1.1 1.4037e+00 1.6546e-01 8.4833 < 2.2e-16 ***
< phi1.2 -2.3333e-01 2.1022e-01 -1.1099 0.267047
< trend2 6.9321e-04 2.3867e-03 0.2904 0.771473
< phi2.1 7.3901e-01 2.9735e-01 2.4853 0.012945 *
< phi2.2 -1.0305e+00 3.5984e-01 -2.8639 0.004185 **
< gamma 2.5757e+00 1.3490e+00 1.9094 0.056213 .
< th 2.6980e+00 1.6637e-01 16.2169 < 2.2e-16 ***
---
> trend1 1.8252e-05 1.6344e-03 0.0112 0.991090
> phi1.1 1.4037e+00 1.6554e-01 8.4793 < 2.2e-16 ***
> phi1.2 -2.3333e-01 2.1044e-01 -1.1087 0.267542
> trend2 6.9321e-04 2.3867e-03 0.2904 0.771476
> phi2.1 7.3901e-01 2.9754e-01 2.4837 0.013002 *
> phi2.2 -1.0305e+00 3.6030e-01 -2.8602 0.004234 **
> gamma 2.5757e+00 1.3529e+00 1.9038 0.056942 .
> th 2.6980e+00 1.6629e-01 16.2246 < 2.2e-16 ***
388,397c393,402
< const1 3.8694e-01 3.1768e-01 1.2180 0.2232142
< trend1 2.5958e-04 1.3092e-03 0.1983 0.8428239
< phi1.1 1.2410e+00 1.5052e-01 8.2444 2.220e-16 ***
< phi1.2 -3.2770e-01 9.8629e-02 -3.3226 0.0008919 ***
< const2 7.9812e-01 3.7117e-01 2.1503 0.0315332 *
< trend2 1.9957e-04 1.4824e-03 0.1346 0.8929096
< phi2.1 3.0345e-01 1.7018e-01 1.7831 0.0745682 .
< phi2.2 -6.3465e-01 1.2179e-01 -5.2110 1.879e-07 ***
< gamma 1.0000e+02 8.0617e+01 1.2404 0.2148175
< th 2.5681e+00 1.4783e-02 173.7186 < 2.2e-16 ***
---
> const1 3.8694e-01 3.1768e-01 1.2180 0.223218
> trend1 2.5958e-04 1.3092e-03 0.1983 0.842824
> phi1.1 1.2410e+00 1.5053e-01 8.2443 2.220e-16 ***
> phi1.2 -3.2770e-01 9.8630e-02 -3.3226 0.000892 ***
> const2 7.9812e-01 3.7117e-01 2.1503 0.031534 *
> trend2 1.9957e-04 1.4824e-03 0.1346 0.892910
> phi2.1 3.0345e-01 1.7018e-01 1.7831 0.074570 .
> phi2.2 -6.3465e-01 1.2179e-01 -5.2109 1.879e-07 ***
> gamma 1.0000e+02 8.0617e+01 1.2404 0.214813
> th 2.5681e+00 1.4783e-02 173.7213 < 2.2e-16 ***
Running ‘nlar-methods.R’ [4s/4s]
Comparing ‘nlar-methods.Rout’ to ‘nlar-methods.Rout.save’ ...4,6c4,11
< This is mgcv 1.7-24. For overview type 'help("mgcv-package")'.
< Warning message:
< In initDefaultClusterOptions(libname) : NAs introduced by coercion
---
> This is mgcv 1.7-22. For overview type 'help("mgcv-package")'.
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:stats':
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> toeplitz
>
Running ‘regime.R’ [4s/4s]
Running ‘toMlm.R’ [2s/2s]
Comparing ‘toMlm.Rout’ to ‘toMlm.Rout.save’ ...4,6c4,11
< This is mgcv 1.7-24. For overview type 'help("mgcv-package")'.
< Warning message:
< In initDefaultClusterOptions(libname) : NAs introduced by coercion
---
> This is mgcv 1.7-22. For overview type 'help("mgcv-package")'.
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:stats':
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> toeplitz
>
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [13s/13s] OK
checking re-building of vignette PDFs ... [15s/15s] OK
checking PDF version of manual ... OK
WARNING: There was 1 warning.
See
‘/home/hornik/tmp/R.check/r-release-ng/Work/PKGS/tsDyn.Rcheck/00check.log’
for details.