* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’ * installing *source* package ‘mvabund’ ... ** package ‘mvabund’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’ using C++11 make[1]: Entering directory '/tmp/RtmpIhOrOP/R.INSTALL3e995830c5d5e4/mvabund/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rinterface.cpp -o Rinterface.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c anova.cpp -o anova.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c calctest.cpp -o calctest.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c glm.cpp -o glm.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c glmtest.cpp -o glmtest.o glmtest.cpp: In member function ‘int GlmTest::resampNonCase(glm*, gsl_matrix*, unsigned int)’: glmtest.cpp:849:23: warning: ‘tmp’ may be used uninitialized [-Wmaybe-uninitialized] 849 | gsl_sort_index(permid, tmp, 1, nRows); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from resampTest.h:26, from glmtest.cpp:5: /usr/include/gsl/gsl_sort_double.h:41:6: note: by argument 2 of type ‘const double*’ to ‘void gsl_sort_index(size_t*, const double*, size_t, size_t)’ declared here 41 | void gsl_sort_index (size_t * p, const double * data, const size_t stride, const size_t n); | ^~~~~~~~~~~~~~ glmtest.cpp:876:23: warning: ‘tmp’ may be used uninitialized [-Wmaybe-uninitialized] 876 | gsl_sort_index(permid, tmp, 1, nRows); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gsl/gsl_sort_double.h:41:6: note: by argument 2 of type ‘const double*’ to ‘void gsl_sort_index(size_t*, const double*, size_t, size_t)’ declared here 41 | void gsl_sort_index (size_t * p, const double * data, const size_t stride, const size_t n); | ^~~~~~~~~~~~~~ g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c io.cpp -o io.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rnd.cpp -o rnd.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simutility.cpp -o simutility.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summary.cpp -o summary.o g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o mvabund.so RcppExports.o Rinterface.o anova.o calctest.o glm.o glmtest.o io.o rnd.o simutility.o summary.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpIhOrOP/R.INSTALL3e995830c5d5e4/mvabund/src' make[1]: Entering directory '/tmp/RtmpIhOrOP/R.INSTALL3e995830c5d5e4/mvabund/src' make[1]: Leaving directory '/tmp/RtmpIhOrOP/R.INSTALL3e995830c5d5e4/mvabund/src' installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-mvabund/00new/mvabund/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘mvabund’ as ‘mvabund_4.2.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (mvabund)