• using R version 3.3.1 (2016-06-21)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘ibdreg/DESCRIPTION’ ... OK
• this is package ‘ibdreg’ version ‘0.2.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ibdreg’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... NOTE
  Non-standard file/directory found at top level:
    ‘perl’
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  create.ibd.dat: no visible global function definition for ‘read.table’
  create.pairs.frame: no visible global function definition for ‘terms’
  ibd.moments: no visible global function definition for ‘var’
  ibdreg: no visible global function definition for ‘terms’
  ibdreg: no visible global function definition for ‘as.formula’
  linkage.tests: no visible global function definition for ‘pchisq’
  pchibar: no visible global function definition for ‘pchisq’
  plot.linkage.all: no visible global function definition for ‘plot’
  plot.linkage.all: no visible global function definition for ‘title’
  plotpval: no visible global function definition for ‘plot’
  plotpval: no visible global function definition for ‘lines’
  sim.ibd.var: no visible global function definition for ‘read.table’
  sim.mark.prop: no visible global function definition for ‘runif’
  Undefined global functions or variables:
    as.formula lines pchisq plot read.table runif terms title var
  Consider adding
    importFrom("graphics", "lines", "plot", "title")
    importFrom("stats", "as.formula", "pchisq", "runif", "terms", "var")
    importFrom("utils", "read.table")
  to your NAMESPACE file.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [0s/0s] OK
• checking PDF version of manual ... OK
• DONE

Status: 2 NOTEs