- using R version 3.5.0 (2018-04-23)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘gpmap/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘gpmap’ version ‘0.1.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘gpmap’ can be installed ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Checking should be performed on sources prepared by ‘R CMD build’.
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
‘foreach’ ‘ggplot2’ ‘isotone’ ‘plyr’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [5s/7s] NOTE
decompose_monotone: no visible global function definition for ‘%dopar%’
decompose_monotone: no visible global function definition for ‘foreach’
decompose_monotone: no visible global function definition for ‘%do%’
decompose_monotone_single: no visible global function definition for
‘%dopar%’
decompose_monotone_single: no visible global function definition for
‘foreach’
decompose_monotone_single: no visible global function definition for
‘laply’
decompose_monotone_single: no visible global function definition for
‘var’
degree_of_monotonicity: no visible global function definition for
‘%do%’
degree_of_monotonicity: no visible global function definition for
‘foreach’
degree_of_monotonicity_single: no visible global function definition
for ‘aaply’
monotone_regression: no visible global function definition for
‘activeSet’
partial_genotype_order: no visible global function definition for
‘aaply’
plot1_dec: no visible global function definition for ‘%do%’
plot1_dec: no visible global function definition for ‘foreach’
plot1_dec: no visible global function definition for ‘ggplot’
plot1_dec: no visible global function definition for ‘aes_string’
plot1_dec: no visible global function definition for ‘geom_point’
plot1_dec: no visible global function definition for ‘facet_wrap’
plot1_dec: no visible global function definition for ‘labs’
plot1_orig: no visible global function definition for ‘%do%’
plot1_orig: no visible global function definition for ‘foreach’
plot1_orig: no visible global function definition for ‘ggplot’
plot1_orig: no visible global function definition for ‘aes_string’
plot1_orig: no visible global function definition for ‘geom_line’
plot1_orig: no visible global function definition for ‘labs’
plot2_dec: no visible global function definition for ‘%do%’
plot2_dec: no visible global function definition for ‘foreach’
plot2_dec: no visible global function definition for ‘ggplot’
plot2_dec: no visible global function definition for ‘aes_string’
plot2_dec: no visible global function definition for ‘geom_line’
plot2_dec: no visible global function definition for ‘facet_wrap’
plot2_dec: no visible global function definition for ‘labs’
plot2_orig: no visible global function definition for ‘%do%’
plot2_orig: no visible global function definition for ‘foreach’
plot2_orig: no visible global function definition for ‘ggplot’
plot2_orig: no visible global function definition for ‘aes_string’
plot2_orig: no visible global function definition for ‘geom_line’
plot2_orig: no visible global function definition for ‘labs’
plot3_dec: no visible global function definition for ‘%do%’
plot3_dec: no visible global function definition for ‘foreach’
plot3_dec: no visible global function definition for ‘ggplot’
plot3_dec: no visible global function definition for ‘aes_string’
plot3_dec: no visible global function definition for ‘geom_line’
plot3_dec: no visible global function definition for ‘facet_grid’
plot3_dec: no visible global function definition for ‘as.formula’
plot3_dec: no visible global function definition for ‘labs’
plot3_orig: no visible global function definition for ‘%do%’
plot3_orig: no visible global function definition for ‘foreach’
plot3_orig: no visible global function definition for ‘ggplot’
plot3_orig: no visible global function definition for ‘aes_string’
plot3_orig: no visible global function definition for ‘geom_line’
plot3_orig: no visible global function definition for ‘facet_wrap’
plot3_orig: no visible global function definition for ‘as.formula’
plot3_orig: no visible global function definition for ‘labs’
Undefined global functions or variables:
%do% %dopar% aaply activeSet aes_string as.formula facet_grid
facet_wrap foreach geom_line geom_point ggplot labs laply var
Consider adding
importFrom("stats", "as.formula", "var")
to your NAMESPACE file.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [3s/4s] OK
- checking differences from ‘gpmap-Ex.Rout’ to ‘gpmap-Ex.Rout.save’ ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [3s/4s] OK
Running ‘genotype_test.R’ [1s/1s]
Comparing ‘genotype_test.Rout’ to ‘genotype_test.Rout.save’ ... OK
Running ‘test_code_example.R’ [2s/2s]
Comparing ‘test_code_example.Rout’ to ‘test_code_example.Rout.save’ ... OK
- checking PDF version of manual ... OK
- DONE
Status: 3 NOTEs