• using R version 3.3.1 (2016-06-21)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘gpmap/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘gpmap’ version ‘0.1.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gpmap’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... NOTE
  Malformed Description field: should contain one or more complete sentences.
  Checking should be performed on sources prepared by ‘R CMD build’.
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE
  Packages in Depends field not imported from:
    ‘foreach’ ‘ggplot2’ ‘isotone’ ‘plyr’
    These packages need to be imported from (in the NAMESPACE file)
    for when this namespace is loaded but not attached.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  decompose_monotone: no visible global function definition for ‘%dopar%’
  decompose_monotone: no visible global function definition for ‘foreach’
  decompose_monotone: no visible global function definition for ‘%do%’
  decompose_monotone_single: no visible global function definition for
    ‘%dopar%’
  decompose_monotone_single: no visible global function definition for
    ‘foreach’
  decompose_monotone_single: no visible global function definition for
    ‘laply’
  decompose_monotone_single: no visible global function definition for
    ‘var’
  degree_of_monotonicity: no visible global function definition for
    ‘%do%’
  degree_of_monotonicity: no visible global function definition for
    ‘foreach’
  degree_of_monotonicity_single: no visible global function definition
    for ‘aaply’
  monotone_regression: no visible global function definition for
    ‘activeSet’
  partial_genotype_order: no visible global function definition for
    ‘aaply’
  plot1_dec: no visible global function definition for ‘%do%’
  plot1_dec: no visible global function definition for ‘foreach’
  plot1_dec: no visible global function definition for ‘ggplot’
  plot1_dec: no visible global function definition for ‘aes_string’
  plot1_dec: no visible global function definition for ‘geom_point’
  plot1_dec: no visible global function definition for ‘facet_wrap’
  plot1_dec: no visible global function definition for ‘labs’
  plot1_orig: no visible global function definition for ‘%do%’
  plot1_orig: no visible global function definition for ‘foreach’
  plot1_orig: no visible global function definition for ‘ggplot’
  plot1_orig: no visible global function definition for ‘aes_string’
  plot1_orig: no visible global function definition for ‘geom_line’
  plot1_orig: no visible global function definition for ‘labs’
  plot2_dec: no visible global function definition for ‘%do%’
  plot2_dec: no visible global function definition for ‘foreach’
  plot2_dec: no visible global function definition for ‘ggplot’
  plot2_dec: no visible global function definition for ‘aes_string’
  plot2_dec: no visible global function definition for ‘geom_line’
  plot2_dec: no visible global function definition for ‘facet_wrap’
  plot2_dec: no visible global function definition for ‘labs’
  plot2_orig: no visible global function definition for ‘%do%’
  plot2_orig: no visible global function definition for ‘foreach’
  plot2_orig: no visible global function definition for ‘ggplot’
  plot2_orig: no visible global function definition for ‘aes_string’
  plot2_orig: no visible global function definition for ‘geom_line’
  plot2_orig: no visible global function definition for ‘labs’
  plot3_dec: no visible global function definition for ‘%do%’
  plot3_dec: no visible global function definition for ‘foreach’
  plot3_dec: no visible global function definition for ‘ggplot’
  plot3_dec: no visible global function definition for ‘aes_string’
  plot3_dec: no visible global function definition for ‘geom_line’
  plot3_dec: no visible global function definition for ‘facet_grid’
  plot3_dec: no visible global function definition for ‘as.formula’
  plot3_dec: no visible global function definition for ‘labs’
  plot3_orig: no visible global function definition for ‘%do%’
  plot3_orig: no visible global function definition for ‘foreach’
  plot3_orig: no visible global function definition for ‘ggplot’
  plot3_orig: no visible global function definition for ‘aes_string’
  plot3_orig: no visible global function definition for ‘geom_line’
  plot3_orig: no visible global function definition for ‘facet_wrap’
  plot3_orig: no visible global function definition for ‘as.formula’
  plot3_orig: no visible global function definition for ‘labs’
  Undefined global functions or variables:
    %do% %dopar% aaply activeSet aes_string as.formula facet_grid
    facet_wrap foreach geom_line geom_point ggplot labs laply var
  Consider adding
    importFrom("stats", "as.formula", "var")
  to your NAMESPACE file.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [2s/2s] OK
• checking differences from ‘gpmap-Ex.Rout’ to ‘gpmap-Ex.Rout.save’ ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/2s] OK
    Running ‘genotype_test.R’ [0s/0s]
    Comparing ‘genotype_test.Rout’ to ‘genotype_test.Rout.save’ ... OK
    Running ‘test_code_example.R’ [1s/1s]
    Comparing ‘test_code_example.Rout’ to ‘test_code_example.Rout.save’ ... OK
• checking PDF version of manual ... OK
• DONE

Status: 3 NOTEs