- using R version 3.5.0 (2018-04-23)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘geoR/DESCRIPTION’ ... OK
- this is package ‘geoR’ version ‘1.7-5.2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘geoR’ can be installed ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [50s/63s] NOTE
.ldots.set: no visible global function definition for ‘getS3method’
grf: no visible global function definition for ‘chull’
image.grf: no visible global function definition for ‘heat.colors’
image.krige.bayes: no visible global function definition for
‘heat.colors’
legend.krige: no visible global function definition for ‘heat.colors’
points.geodata: no visible global function definition for
‘terrain.colors’
points.geodata: no visible global function definition for ‘gray’
read.geodata: no visible global function definition for ‘read.table’
Undefined global functions or variables:
chull getS3method gray heat.colors read.table terrain.colors
Consider adding
importFrom("grDevices", "chull", "gray", "heat.colors",
"terrain.colors")
importFrom("utils", "getS3method", "read.table")
to your NAMESPACE file.
Found the following assignments to the global environment:
File ‘geoR/R/auxiliar.R’:
assign(".objfuncQQ", objfunc, pos = 1)
assign(".bounds.list", .bounds.list, pos = 1)
assign("madtonormalQQ", madtonormalQQ, pos = 1)
File ‘geoR/R/likGRF.R’:
assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
realisations), vecdist), pos = 1)
assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
realisations), vecdist), pos = 1)
assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
temp.list$realisations), vecdist), pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
File ‘geoR/R/profiles.R’:
assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
sigmasq.est = sigmasq), pos = 1)
assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
assign(".temp.list", .temp.temp.list, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
File ‘geoR/R/simul.R’:
assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
pos = 1)
File ‘geoR/R/variofit.R’:
assign(".temp.theta", NULL, pos = 1)
assign(".temp.theta", theta, pos = 1)
assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
File ‘geoR/R/variogram.R’:
assign(".variog4.nomessage", TRUE, pos = 1)
Found the following calls to attach():
File ‘geoR/R/auxiliar.R’:
attach(geodata, pos = 2, warn.conflicts = FALSE)
attach(geodata$covariate, pos = 3, warn.conflicts = FALSE)
File ‘geoR/R/geobayes.R’:
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
File ‘geoR/R/geodata.R’:
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
File ‘geoR/R/kriging.R’:
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
See section ‘Good practice’ in ‘?attach’.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... NOTE
File ‘geoR/libs/geoR.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [14s/17s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
xvalid 4.647 0.094 5.654
- checking PDF version of manual ... OK
- DONE
Status: 2 NOTEs