* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’ * installing *source* package ‘blatent’ ... ** package ‘blatent’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’ make[1]: Entering directory '/tmp/Rtmpfjr7Sg/R.INSTALL5cdf31a5d8a2/blatent/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bernoulli_likelihood.cpp -o bernoulli_likelihood.o bernoulli_likelihood.cpp: In function ‘Rcpp::NumericVector bernoulli_likelihood(Rcpp::DataFrame, arma::mat, Rcpp::RObject, Rcpp::String)’: bernoulli_likelihood.cpp:19:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 19 | for (int i=0; i< y.n_rows; i++){ | ~^~~~~~~~~~ bernoulli_likelihood.cpp: In function ‘Rcpp::NumericVector bernoulli_likelihood2(Rcpp::DataFrame, Rcpp::List, Rcpp::RObject, Rcpp::String)’: bernoulli_likelihood.cpp:43:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 43 | for (int i=0; i< y.n_rows; i++){ | ~^~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bin2dec_Rcpp.cpp -o bin2dec_Rcpp.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c getMeanAndCov_HH2006L1.cpp -o getMeanAndCov_HH2006L1.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c likelihoodPtr.cpp -o likelihoodPtr.o likelihoodPtr.cpp: In function ‘SEXPREC* create_xptr(std::string)’: likelihoodPtr.cpp:35:20: warning: typedef ‘funcPtr’ locally defined but not used [-Wunused-local-typedefs] 35 | typedef double (*funcPtr)(const Rcpp::DataFrame& data, | ^~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rks_Rcpp.cpp -o rks_Rcpp.o rks_Rcpp.cpp: In function ‘Rcpp::NumericVector rks_Rcpp(int, Rcpp::NumericVector)’: rks_Rcpp.cpp:24:8: warning: variable ‘broken’ set but not used [-Wunused-but-set-variable] 24 | bool broken; | ^~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rmvnorm_Rcpp.cpp -o rmvnorm_Rcpp.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sampleBernoulliUnits.cpp -o sampleBernoulliUnits.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sampleMultivariateBernoulliUnits.cpp -o sampleMultivariateBernoulliUnits.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o blatent.so RcppExports.o bernoulli_likelihood.o bin2dec_Rcpp.o getMeanAndCov_HH2006L1.o likelihoodPtr.o rks_Rcpp.o rmvnorm_Rcpp.o sampleBernoulliUnits.o sampleMultivariateBernoulliUnits.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmpfjr7Sg/R.INSTALL5cdf31a5d8a2/blatent/src' make[1]: Entering directory '/tmp/Rtmpfjr7Sg/R.INSTALL5cdf31a5d8a2/blatent/src' make[1]: Leaving directory '/tmp/Rtmpfjr7Sg/R.INSTALL5cdf31a5d8a2/blatent/src' installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-blatent/00new/blatent/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘blatent’ as ‘blatent_0.1.2_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (blatent)