* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘bipartite’ ...
** package ‘bipartite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-24) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/RtmpVhKi43/R.INSTALL1045267ace7f91/bipartite/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bmn5.cc -o bmn5.o
bmn5.cc: In function ‘void matrixSize(std::string, int&, int&, int&)’:
bmn5.cc:537:23: warning: argument 1 null where non-null expected [-Wnonnull]
537 | fclose(f);
| ~~~~~~^~~
In file included from /usr/include/c++/13/cstdio:42,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/R.h:40,
from bmn5.cc:1:
/usr/include/stdio.h:183:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
183 | extern int fclose (FILE *__stream) __nonnull ((1));
| ^~~~~~
bmn5.cc:555:39: warning: argument 1 null where non-null expected [-Wnonnull]
555 | fclose(f);
| ~~~~~~^~~
/usr/include/stdio.h:183:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
183 | extern int fclose (FILE *__stream) __nonnull ((1));
| ^~~~~~
bmn5.cc:564:31: warning: argument 1 null where non-null expected [-Wnonnull]
564 | fclose(f);
| ~~~~~~^~~
/usr/include/stdio.h:183:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
183 | extern int fclose (FILE *__stream) __nonnull ((1));
| ^~~~~~
In file included from /usr/include/stdio.h:964:
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1580:29,
inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1565:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:948:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1220:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1226:12:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1228:11:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1230:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
bmn5.cc:1232:23: warning: argument 1 null where non-null expected [-Wnonnull]
1232 | fclose(out);
| ~~~~~~^~~~~
/usr/include/stdio.h:183:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
183 | extern int fclose (FILE *__stream) __nonnull ((1));
| ^~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1274:21:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1275:21:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1278:42:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1280:43:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1283:41:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1285:22:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1286:23:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1289:43:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1291:44:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1294:42:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1296:22:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1317:20:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1318:20:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1321:42:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1323:43:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1326:41:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1328:22:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1329:23:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1332:43:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1334:44:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1337:42:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1339:23:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
bmn5.cc:1346:23: warning: argument 1 null where non-null expected [-Wnonnull]
1346 | if (bmo==1) fclose(out);
| ~~~~~~^~~~~
/usr/include/stdio.h:183:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
183 | extern int fclose (FILE *__stream) __nonnull ((1));
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c identifyModules.cc -o identifyModules.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o bipartite.so bmn5.o identifyModules.o init.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpVhKi43/R.INSTALL1045267ace7f91/bipartite/src'
make[1]: Entering directory '/tmp/RtmpVhKi43/R.INSTALL1045267ace7f91/bipartite/src'
make[1]: Leaving directory '/tmp/RtmpVhKi43/R.INSTALL1045267ace7f91/bipartite/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-bipartite/00new/bipartite/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘bipartite’ as ‘bipartite_2.20_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (bipartite)