* using log directory ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/SHELF.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (Debian 13.2.0-24) 13.2.0 GNU Fortran (Debian 13.2.0-24) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘SHELF/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SHELF’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SHELF’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-release-linux-x86_64/SHELF-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/3s] OK * checking whether the package can be loaded with stated dependencies ... [1s/2s] OK * checking whether the package can be unloaded cleanly ... [1s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/3s] OK * checking loading without being on the library search path ... [2s/4s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [36s/44s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [2s/3s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [4s/5s] OK Running ‘testthat.R’ [4s/5s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [23s/30s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘Dirichlet-elicitation.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/SHELF.Rcheck/vign_test/SHELF/vignettes/Dirichlet-elicitation_files/figure-html/unnamed-chunk-5-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28713 bytes Input file size = 28827 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23108 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23108 Output IDAT size = 23108 bytes (5605 bytes decrease) Output file size = 23186 bytes (5641 bytes = 19.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/SHELF.Rcheck/vign_test/SHELF/vignettes/Dirichlet-elicitation_files/figure-html/unnamed-chunk-7-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29434 bytes Input file size = 29548 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23482 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23482 Output IDAT size = 23482 bytes (5952 bytes decrease) Output file size = 23560 bytes (5988 bytes = 20.27% decrease) --- finished re-building ‘Dirichlet-elicitation.Rmd’ --- re-building ‘Multivariate-normal-copula.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/SHELF.Rcheck/vign_test/SHELF/vignettes/Multivariate-normal-copula_files/figure-html/unnamed-chunk-2-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6474 bytes Input file size = 7329 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5792 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5756 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5756 Output IDAT size = 5756 bytes (718 bytes decrease) Output file size = 5834 bytes (1495 bytes = 20.40% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/SHELF.Rcheck/vign_test/SHELF/vignettes/Multivariate-normal-copula_files/figure-html/unnamed-chunk-2-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6326 bytes Input file size = 7184 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5630 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5593 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5593 Output IDAT size = 5593 bytes (733 bytes decrease) Output file size = 5671 bytes (1513 bytes = 21.06% decrease) Quitting from lines 75-79 [unnamed-chunk-3] (Multivariate-normal-copula.Rmd) Error: processing vignette 'Multivariate-normal-copula.Rmd' failed with diagnostics: failed convergence, try with solver="RFB" --- failed re-building ‘Multivariate-normal-copula.Rmd’ --- re-building ‘SHELF-overview.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/SHELF.Rcheck/vign_test/SHELF/vignettes/SHELF-overview_files/figure-html/plot-fitted-distributions-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24064 bytes Input file size = 24166 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19855 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19855 Output IDAT size = 19855 bytes (4209 bytes decrease) Output file size = 19933 bytes (4233 bytes = 17.52% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/SHELF.Rcheck/vign_test/SHELF/vignettes/SHELF-overview_files/figure-html/plot-RIO-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18627 bytes Input file size = 18729 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15616 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15616 Output IDAT size = 15616 bytes (3011 bytes decrease) Output file size = 15694 bytes (3035 bytes = 16.20% decrease) --- finished re-building ‘SHELF-overview.Rmd’ SUMMARY: processing the following file failed: ‘Multivariate-normal-copula.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [7s/9s] OK * checking HTML version of manual ... [2s/3s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 ERROR