* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’ * installing *source* package ‘RMVL’ ... ** package ‘RMVL’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-24) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’ make[1]: Entering directory '/tmp/Rtmp02bHKm/R.INSTALL2e52924294b59/RMVL/src' gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RlibMVL.c -o RlibMVL.o RlibMVL.c: In function ‘write_vector’: RlibMVL.c:1692:18: warning: unused variable ‘strvec’ [-Wunused-variable] 1692 | LIBMVL_OFFSET64 *strvec; | ^~~~~~ RlibMVL.c: In function ‘start_write_vector’: RlibMVL.c:1933:18: warning: unused variable ‘strvec’ [-Wunused-variable] 1933 | LIBMVL_OFFSET64 *strvec; | ^~~~~~ RlibMVL.c:1932:19: warning: unused variable ‘strvec2’ [-Wunused-variable] 1932 | const char *ch, **strvec2; | ^~~~~~~ RlibMVL.c: In function ‘rewrite_vector’: RlibMVL.c:2182:18: warning: unused variable ‘strvec’ [-Wunused-variable] 2182 | LIBMVL_OFFSET64 *strvec; | ^~~~~~ RlibMVL.c:2181:19: warning: unused variable ‘strvec2’ [-Wunused-variable] 2181 | const char *ch, **strvec2; | ^~~~~~~ RlibMVL.c: In function ‘write_spatial_groups1’: RlibMVL.c:3494:6: warning: unused variable ‘data’ [-Wunused-variable] 3494 | SEXP data; | ^~~~ RlibMVL.c: In function ‘group_lapply’: RlibMVL.c:5213:26: warning: unused variable ‘stretch_max’ [-Wunused-variable] 5213 | LIBMVL_OFFSET64 N, Nidx, stretch_max; | ^~~~~~~~~~~ RlibMVL.c: In function ‘neighbors_lapply’: RlibMVL.c:4533:6: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 4533 | ball=calloc(ball_size*Nbits, sizeof(*ball)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/R.h:43, from RlibMVL.c:19: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libMVL.c -o libMVL.o libMVL.c: In function ‘mvl_write_directory’: libMVL.c:884:7: warning: unused variable ‘cur’ [-Wunused-variable] 884 | off_t cur; | ^~~ libMVL.c:882:18: warning: unused variable ‘p’ [-Wunused-variable] 882 | LIBMVL_OFFSET64 *p; | ^ libMVL.c: In function ‘mvl_load_image’: libMVL.c:1405:5: warning: unused variable ‘i’ [-Wunused-variable] 1405 | int i; | ^ libMVL.c:1404:17: warning: unused variable ‘k’ [-Wunused-variable] 1404 | LIBMVL_OFFSET64 k; | ^ libMVL.c:1403:22: warning: unused variable ‘a’ [-Wunused-variable] 1403 | LIBMVL_VECTOR *dir, *a; | ^ libMVL.c:1403:16: warning: unused variable ‘dir’ [-Wunused-variable] 1403 | LIBMVL_VECTOR *dir, *a; | ^~~ libMVL.c: In function ‘mvl_indexed_copy_vector’: libMVL.c:476:25: warning: ‘char_offset’ may be used uninitialized [-Wmaybe-uninitialized] 476 | LIBMVL_OFFSET64 offset, char_offset; | ^~~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libMVL_sort.cc -o libMVL_sort.o In file included from libMVL_sort.cc:8: libMVL.h: In function ‘double mvl_as_double(const LIBMVL_VECTOR*, long int)’: libMVL.h:529:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare] 529 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(NAN); | ^ libMVL.h: In function ‘double mvl_as_double_default(const LIBMVL_VECTOR*, long int, double)’: libMVL.h:556:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare] 556 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(def); | ^ libMVL.h: In function ‘LIBMVL_OFFSET64 mvl_as_offset(const LIBMVL_VECTOR*, long int)’: libMVL.h:583:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare] 583 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(0); | ^ g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o RMVL.so RlibMVL.o libMVL.o libMVL_sort.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmp02bHKm/R.INSTALL2e52924294b59/RMVL/src' make[1]: Entering directory '/tmp/Rtmp02bHKm/R.INSTALL2e52924294b59/RMVL/src' make[1]: Leaving directory '/tmp/Rtmp02bHKm/R.INSTALL2e52924294b59/RMVL/src' installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-RMVL/00new/RMVL/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘RMVL’ as ‘RMVL_1.1.0.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (RMVL)