* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘NMF’ ...
** package ‘NMF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpBp6s9t/R.INSTALL35eb84bbd5e22/NMF/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -c distance.cpp -o distance.o
distance.cpp: In function ‘SEXPREC* Euclidean_rss(SEXP, SEXP)’:
distance.cpp:43:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   43 |     if( INTEGER(GET_DIM(y))[1] != p )
      |     ^~
distance.cpp:46:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   46 |         if( TYPEOF(x) == REALSXP ){// x is double
      |         ^~
distance.cpp: In function ‘SEXPREC* KL_divergence(SEXP, SEXP)’:
distance.cpp:69:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   69 |     if( INTEGER(GET_DIM(y))[1] != p )
      |     ^~
distance.cpp:72:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   72 |         if( TYPEOF(x) == REALSXP ){// x is double
      |         ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -c divergence.cpp -o divergence.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -c euclidean.cpp -o euclidean.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -c utils.cpp -o utils.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o NMF.so distance.o divergence.o euclidean.o registerDynamicSymbol.o utils.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpBp6s9t/R.INSTALL35eb84bbd5e22/NMF/src'
make[1]: Entering directory '/tmp/RtmpBp6s9t/R.INSTALL35eb84bbd5e22/NMF/src'
make[1]: Leaving directory '/tmp/RtmpBp6s9t/R.INSTALL35eb84bbd5e22/NMF/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-NMF/00new/NMF/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Setting package specific options: package:NMF:logger (1 default option(s))
Setting package specific options: package:NMF (10 default option(s))
Creating a generic function for ‘plot’ from ‘graphics’ in package ‘NMF’
    (from the saved implicit definition)
Creating meta registry in package 'NMF' ... OK
Creating registry 'extra_handler' in package 'NMF' ... OK
Creating registry 'extra_action' in package 'NMF' ... OK
Registering extra handler 'install.packages' [function] ... OK
Creating registry 'algorithm' in package 'NMF' ... OK
Registering NMF algorithm '.R#brunet' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'brunet' [NMFStrategyIterative] based on template '.R#brunet' ... OK
Registering NMF algorithm 'KL' [NMFStrategyIterative] ... OK
Registering NMF algorithm '.R#lee' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'lee' [NMFStrategyIterative] based on template '.R#lee' ... OK
Registering NMF algorithm 'Frobenius' [NMFStrategyIterative] ... OK
Registering NMF algorithm '.R#offset' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'offset' [NMFStrategyIterative] based on template '.R#offset' ... OK
Registering NMF algorithm '.R#nsNMF' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'nsNMF' [NMFStrategyIterative] based on template '.R#nsNMF' ... OK
Registering NMF algorithm 'ls-nmf' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'pe-nmf' [NMFStrategyIterative] ... OK
Registering NMF algorithm '.siNMF' [NMFStrategyIterative] based on template 'lee' ... OK
Registering NMF algorithm 'siNMF' [NMFStrategyIterative] based on template 'lee' ... OK
Registering NMF algorithm 'snmf/r' [NMFStrategyFunction] ... OK
Registering NMF algorithm 'snmf/l' [NMFStrategyFunction] ... OK
Registering extra action 'bigmemory' for handler 'install.packages' ... OK
Registering extra action 'synchronicity' for handler 'install.packages' ... OK
Creating registry 'seed' in package 'NMF' ... OK
Registering NMF seeding method 'none' [NMFSeed] ... OK
Registering NMF seeding method 'random' [NMFSeed] ... OK
Registering NMF seeding method 'ica' [NMFSeed] ... OK
Registering NMF seeding method 'nndsvd' [NMFSeed] ... OK
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NMF)