• using R version 3.3.1 (2016-06-21)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘IBHM/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘IBHM’ version ‘1.1-11’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘IBHM’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE
  Package in Depends field not imported from: ‘compiler’
    These packages need to be imported from (in the NAMESPACE file)
    for when this namespace is loaded but not attached.
• checking S3 generic/method consistency ... NOTE
  Found the following apparent S3 methods exported but not registered:
    length.IBHM predict.IBHM print.summary.IBHM summary.IBHM
  See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
  manual.
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  ConfigureIBHM : <anonymous>: no visible global function definition for
    ‘dnorm’
  FindActiv: no visible global function definition for ‘sd’
  OptimizeActivCMAES: no visible global function definition for ‘runif’
  OptimizeActivNM: no visible global function definition for ‘optim’
  OptimizeActivNM: no visible global function definition for ‘runif’
  OptimizeAllParams : goal: no visible global function definition for
    ‘relist’
  OptimizeAllParams: no visible global function definition for ‘optim’
  OptimizeAllParams: no visible global function definition for ‘relist’
  OptimizeAllWeights: no visible global function definition for ‘optim’
  OptimizeScalCMAES: no visible global function definition for ‘runif’
  OptimizeScalNM: no visible global function definition for ‘optim’
  OptimizeScalNM: no visible global function definition for ‘runif’
  OptimizeWeights: no visible global function definition for ‘optim’
  TrainIBHM: no visible global function definition for ‘enableJIT’
  ValidationSC : <anonymous>: no visible global function definition for
    ‘predict’
  group.by.samplesPerDim: no visible global function definition for ‘sd’
  summary.IBHM: no visible global function definition for ‘predict’
  summary.IBHM: no visible global function definition for ‘sd’
  summary.IBHM: no visible global function definition for ‘cor’
  Undefined global functions or variables:
    cor dnorm enableJIT optim predict relist runif sd
  Consider adding
    importFrom("stats", "cor", "dnorm", "optim", "predict", "runif", "sd")
    importFrom("utils", "relist")
  to your NAMESPACE file.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... [19s/19s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [45s/45s] OK
    Running ‘ibhm.tests.R’ [45s/45s]
    Running ‘utils.R’ [0s/0s]
• checking PDF version of manual ... OK
• DONE

Status: 3 NOTEs