* using log directory ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/CohortCharacteristics.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.3.0-8) 14.3.0
    GNU Fortran (Debian 14.3.0-8) 14.3.0
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘CohortCharacteristics/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CohortCharacteristics’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CohortCharacteristics’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-release-linux-x86_64/CohortCharacteristics-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/15s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'mockCohortCharacteristics.Rd':
mockCohortCharacteristics
  Code: function(numberIndividuals = 10, ..., source = "local", con =
                 lifecycle::deprecated(), writeSchema =
                 lifecycle::deprecated(), seed =
                 lifecycle::deprecated())
  Docs: function(con = NULL, writeSchema = NULL, numberIndividuals =
                 10, ..., seed = NULL)
  Argument names in code not in docs:
    source
  Mismatches in argument names (first 3):
    Position: 1 Code: numberIndividuals Docs: con
    Position: 2 Code: ... Docs: writeSchema
    Position: 3 Code: source Docs: numberIndividuals
  Mismatches in argument default values:
    Name: 'con' Code: lifecycle::deprecated() Docs: NULL
    Name: 'writeSchema' Code: lifecycle::deprecated() Docs: NULL
    Name: 'seed' Code: lifecycle::deprecated() Docs: NULL

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/20s] OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
availablePlotColumns  5.726  0.068   9.553
availableTableColumns 5.106  0.000   8.551
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [503s/315s] OK
  Running ‘spelling.R’ [0s/1s]
  Running ‘testthat.R’ [503s/314s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [247s/347s] OK
* checking PDF version of manual ... [7s/9s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 WARNING