- using R version 2.15.0 (2012-03-30)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘stratigraph/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘stratigraph’ version ‘0.64’
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
- checking for executable files ... OK
- checking whether package ‘stratigraph’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
plot.strat.column : spplot: warning in viewport(x = 0, y = 0, w =
unit(1, "npc") - unit(offset.from.max, "points"), h = 1, just =
c("left", "bottom"), clip = "off"): partial argument match of 'w' to
'width'
plot.strat.column : spplot: warning in viewport(x = 0, y = 0, w =
unit(1, "npc") - unit(offset.from.max, "points"), h = 1, just =
c("left", "bottom"), clip = "off"): partial argument match of 'h' to
'height'
plot.strat.column: warning in viewport(x = outer.margins$left, y =
outer.margins$bottom, w = unit(1, "npc") - outer.margins$right -
outer.margins$left, h = unit(1, "npc") - outer.margins$top -
outer.margins$bottom, just = c("left", "bottom"), clip = "off"):
partial argument match of 'w' to 'width'
plot.strat.column: warning in viewport(x = outer.margins$left, y =
outer.margins$bottom, w = unit(1, "npc") - outer.margins$right -
outer.margins$left, h = unit(1, "npc") - outer.margins$top -
outer.margins$bottom, just = c("left", "bottom"), clip = "off"):
partial argument match of 'h' to 'height'
plot.strat.column: warning in viewport(x = 0.5, y = 0.5, w = unit(1,
"npc") - unit(2, "lines"), h = unit(1, "npc") - unit(2, "lines"),
just = c("centre", "centre"), clip = "off"): partial argument match
of 'w' to 'width'
plot.strat.column: warning in viewport(x = 0.5, y = 0.5, w = unit(1,
"npc") - unit(2, "lines"), h = unit(1, "npc") - unit(2, "lines"),
just = c("centre", "centre"), clip = "off"): partial argument match
of 'h' to 'height'
plot.strat.column: warning in viewport(x = 0, y = 0, w = unit(1,
"npc"), h = unit(1, "npc") - metadata.space, just = c("left",
"bottom"), clip = "off"): partial argument match of 'w' to 'width'
plot.strat.column: warning in viewport(x = 0, y = 0, w = unit(1,
"npc"), h = unit(1, "npc") - metadata.space, just = c("left",
"bottom"), clip = "off"): partial argument match of 'h' to 'height'
plot.strat.column: warning in viewport(x = 0, y = 0, w = unit(1, "npc")
- sample.totals.space, h = unit(1, "npc"), just = c("left",
"bottom"), clip = "off"): partial argument match of 'w' to 'width'
plot.strat.column: warning in viewport(x = 0, y = 0, w = unit(1, "npc")
- sample.totals.space, h = unit(1, "npc"), just = c("left",
"bottom"), clip = "off"): partial argument match of 'h' to 'height'
plot.strat.column: warning in viewport(x = 0, y = 0, w = unit(1, "npc")
- sample.category.totals.space, h = unit(1, "npc"), just = c("left",
"bottom"), clip = "off"): partial argument match of 'w' to 'width'
plot.strat.column: warning in viewport(x = 0, y = 0, w = unit(1, "npc")
- sample.category.totals.space, h = unit(1, "npc"), just = c("left",
"bottom"), clip = "off"): partial argument match of 'h' to 'height'
plot.strat.column: warning in viewport(x = unit(0, "npc") + unit(1,
"lines"), y = 0, w = unit(1, "npc") - 2 * sample.labels.space, h =
unit(1, "npc"), just = c("left", "bottom"), clip = "off"): partial
argument match of 'w' to 'width'
plot.strat.column: warning in viewport(x = unit(0, "npc") + unit(1,
"lines"), y = 0, w = unit(1, "npc") - 2 * sample.labels.space, h =
unit(1, "npc"), just = c("left", "bottom"), clip = "off"): partial
argument match of 'h' to 'height'
plot.strat.column: warning in viewport(x = 1, y = 0, w = unit(1, "npc")
- strat.space, h = unit(1, "npc"), just = c("right", "bottom"), clip
= "off"): partial argument match of 'w' to 'width'
plot.strat.column: warning in viewport(x = 1, y = 0, w = unit(1, "npc")
- strat.space, h = unit(1, "npc"), just = c("right", "bottom"), clip
= "off"): partial argument match of 'h' to 'height'
plot.strat.column: warning in viewport(x = 0, y = 0, w = unit(1,
"npc"), h = unit(1, "npc") - unit(1, "lines"), just = c("left",
"bottom"), clip = "off"): partial argument match of 'w' to 'width'
plot.strat.column: warning in viewport(x = 0, y = 0, w = unit(1,
"npc"), h = unit(1, "npc") - unit(1, "lines"), just = c("left",
"bottom"), clip = "off"): partial argument match of 'h' to 'height'
plot.strat.column: warning in viewport(x = 0, y = unit(3, "lines"), w =
unit(1, "npc"), h = unit(1, "npc") - unit(4, "lines") - unit(1,
"strwidth", data = colnames(counts)[longest.taxon.name]), just =
c("left", "bottom"), clip = "off"): partial argument match of 'w' to
'width'
plot.strat.column: warning in viewport(x = 0, y = unit(3, "lines"), w =
unit(1, "npc"), h = unit(1, "npc") - unit(4, "lines") - unit(1,
"strwidth", data = colnames(counts)[longest.taxon.name]), just =
c("left", "bottom"), clip = "off"): partial argument match of 'h' to
'height'
- checking Rd files ... NOTE
prepare_Rd: a.datums.Rd:36: Dropping empty section \note
prepare_Rd: compress2matrix.Rd:33-35: Dropping empty section \references
prepare_Rd: compress2matrix.Rd:44-47: Dropping empty section \examples
prepare_Rd: corneta.Rd:24: Dropping empty section \references
prepare_Rd: dloc.Rd:43: Dropping empty section \details
prepare_Rd: dloc.Rd:59: Dropping empty section \note
prepare_Rd: fill.ranges.Rd:30: Dropping empty section \note
prepare_Rd: fill.ranges.Rd:25-27: Dropping empty section \references
prepare_Rd: gluesheets.Rd:20: Dropping empty section \value
prepare_Rd: gluesheets.Rd:21: Dropping empty section \references
prepare_Rd: grid.prop.plot.Rd:16: Dropping empty section \details
prepare_Rd: grid.prop.plot.Rd:23: Dropping empty section \note
prepare_Rd: grid.prop.plot.Rd:20: Dropping empty section \references
prepare_Rd: mohawk.Rd:27: Dropping empty section \details
prepare_Rd: nonuser.Rd:11: Dropping empty section \usage
prepare_Rd: nonuser.Rd:12: Dropping empty section \arguments
prepare_Rd: nonuser.Rd:13: Dropping empty section \details
prepare_Rd: nonuser.Rd:14: Dropping empty section \value
prepare_Rd: nonuser.Rd:17: Dropping empty section \note
prepare_Rd: nonuser.Rd:15: Dropping empty section \references
prepare_Rd: nonuser.Rd:24: Dropping empty section \examples
prepare_Rd: oe.rates.Rd:39: Dropping empty section \note
prepare_Rd: plain.Rd:14: Dropping empty section \details
prepare_Rd: plain.Rd:21: Dropping empty section \references
prepare_Rd: plot.strat.column.Rd:96: Dropping empty section \references
prepare_Rd: rangechart.Rd:41: Dropping empty section \details
prepare_Rd: rangechart.Rd:45: Dropping empty section \note
prepare_Rd: rangechart.Rd:43: Dropping empty section \references
prepare_Rd: readGPDascii.Rd:17: Dropping empty section \details
prepare_Rd: readGPDascii.Rd:31: Dropping empty section \note
prepare_Rd: rogerslk.Rd:28: Dropping empty section \details
prepare_Rd: sI.Rd:17: Dropping empty section \details
prepare_Rd: sI.Rd:23: Dropping empty section \references
prepare_Rd: strat.column.Rd:147: Dropping empty section \note
prepare_Rd: strat.column.Rd:144: Dropping empty section \references
prepare_Rd: writeCONOP.Rd:29-31: Dropping empty section \details
prepare_Rd: writeCONOP.Rd:33: Dropping empty section \value
prepare_Rd: writeCONOP.Rd:34: Dropping empty section \references
prepare_Rd: writeGPDascii.Rd:33: Dropping empty section \details
prepare_Rd: writeGPDascii.Rd:45: Dropping empty section \note
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [4s/30s] OK
- checking PDF version of manual ... OK
NOTE: There were 3 notes.
See
‘/home/hornik/tmp/R.check/r-release/Work/PKGS/stratigraph.Rcheck/00check.log’
for details.