• using R version 3.0.1 (2013-05-16)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘stochmod/DESCRIPTION’ ... OK
• this is package ‘stochmod’ version ‘1.2.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘stochmod’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .onLoad: warning in assign("debug.output", 1, env = sm.options):
  partial argument match of 'env' to 'envir'
  .onLoad: warning in assign("pure.R", FALSE, env = sm.options): partial
  argument match of 'env' to 'envir'
  SM.getOption: warning in get(name, env = sm.options, inherits = FALSE):
  partial argument match of 'env' to 'envir'
  SM.getOptions: warning in ls(env = sm.options): partial argument match
  of 'env' to 'envir'
  SM.setOption: warning in assign(name, value, env = sm.options): partial
  argument match of 'env' to 'envir'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File ‘/home/hornik/tmp/R.check/r-release/Work/build/Packages/stochmod/libs/stochmod.so’:
  Found ‘printf’, possibly from ‘printf’ (C)
  Objects: ‘gmm.o’, ‘hmm.o’, ‘matrix.o’
  Found ‘putchar’, possibly from ‘putchar’ (C)
  Object: ‘matrix.o’
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
  Objects: ‘gmm.o’, ‘hmm.o’, ‘lda.o’, ‘matrix.o’, ‘qda.o’
  
  Compiled code should not call entry points which might terminate R nor
  write to stdout/stderr instead of to the console.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
• checking examples ... NONE
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/hornik/tmp/R.check/r-release/Work/PKGS/stochmod.Rcheck/00check.log’
  for details.