• using R version 2.14.1 (2011-12-22)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• using option ‘--no-vignettes’
• checking for file ‘statmod/DESCRIPTION’ ... OK
• this is package ‘statmod’ version ‘1.4.14’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘statmod’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  elda: warning in pchisq(dev.g, df = num.group - 1, lower = FALSE):
  partial argument match of 'lower' to 'lower.tail'
  limdil: warning in pchisq(dev.g, df = num.group - 1, lower = FALSE):
  partial argument match of 'lower' to 'lower.tail'
  print.limdil: warning in printCoefmat(a, tst.ind = 1, has.Pvalue =
  TRUE, P.value = TRUE): partial argument match of 'P.value' to
  'P.values'
  sage.test: warning in dbinom(0:isize, p = prob, size = isize): partial
  argument match of 'p' to 'prob'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE
  Package(s) unavailable to check Rd xrefs: ‘edgeR’
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running ‘statmod-Tests.R’
  Comparing ‘statmod-Tests.Rout’ to ‘statmod-Tests.Rout.save’ ... OK
• checking PDF version of manual ... OK