• using R version 2.14.1 (2011-12-22)
  • using platform: i686-pc-linux-gnu (32-bit)
  • using session charset: UTF-8
  • using options ‘--no-examples --no-tests --no-vignettes’
  • checking for file ‘sna/DESCRIPTION’ ... OK
  • this is package ‘sna’ version ‘2.2-0’
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... NOTE
    As from R 2.14.0 all packages need a namespace.
    One will be generated on installation, but it is better to handcraft a
    NAMESPACE file: R CMD build will produce a suitable starting point.
  • checking for executable files ... OK
  • checking whether package ‘sna’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    File ‘sna/R/zzz.R’:
    .First.lib calls:
    cat(paste(substring(ehelp[4], first = 16), "\n", "Version ", substring(ehelp[2], first = 16), " created on ", substring(ehelp[3], first = 16), ".\n", sep = ""))
    cat(paste("copyright (c) 2005, Carter T. Butts, University of California-Irvine\n", sep = ""))
    cat("Type help(package=\"sna\") to get started.\n")

    Package startup functions should use ‘packageStartupMessage’ to
    generate messages.
    See section ‘Good practice’ in ?.onAttach.

    bn: warning in matrix(0, nr = n - 1, nc = 4): partial argument match of
    'nr' to 'nrow'
    bn: warning in matrix(0, nr = n - 1, nc = 4): partial argument match of
    'nc' to 'ncol'
    bn: warning in matrix(.C("bn_dyadstats_R", as.integer(dat),
    as.double(n), stats = as.double(stats), PACKAGE = "sna")$stats, nc =
    4): partial argument match of 'nc' to 'ncol'
    bn: warning in matrix(0, nr = n, nc = n): partial argument match of
    'nr' to 'nrow'
    bn: warning in matrix(0, nr = n, nc = n): partial argument match of
    'nc' to 'ncol'
    bn: warning in matrix(.C("bn_triadstats_R", as.integer(dat),
    as.double(n), stats = as.double(stats), PACKAGE = "sna")$stats, nr =
    n, nc = n): partial argument match of 'nr' to 'nrow'
    bn: warning in matrix(.C("bn_triadstats_R", as.integer(dat),
    as.double(n), stats = as.double(stats), PACKAGE = "sna")$stats, nr =
    n, nc = n): partial argument match of 'nc' to 'ncol'
    cug.test : <anonymous>: warning in rgraph(n, 1, mode = mode, diag =
    diag, tp = 0.5, return.as.edgelist = TRUE): partial argument match of
    'tp' to 'tprob'
    cug.test : <anonymous>: warning in rgraph(n, 1, mode = mode, diag =
    diag, tp = 0.5): partial argument match of 'tp' to 'tprob'
    dyad.census: warning in matrix(man, nr = 1): partial argument match of
    'nr' to 'nrow'
    gapply: warning in matrix(STATS, nc = 1): partial argument match of
    'nc' to 'ncol'
    gplot3d: warning in rgl.bg(col = bg.col): partial argument match of
    'col' to 'color'
    gplot3d.arrow: warning in matrix(a, nc = 3): partial argument match of
    'nc' to 'ncol'
    gplot3d.arrow: warning in matrix(b, nc = 3): partial argument match of
    'nc' to 'ncol'
    gplot3d.loop: warning in matrix(a, nc = 3): partial argument match of
    'nc' to 'ncol'
    gvectorize: warning in matrix(TRUE, nr = dim(d)[2] * dim(d)[3], nc =
    dim(d)[1]): partial argument match of 'nr' to 'nrow'
    gvectorize: warning in matrix(TRUE, nr = dim(d)[2] * dim(d)[3], nc =
    dim(d)[1]): partial argument match of 'nc' to 'ncol'
    infocent: warning in matrix(0, nr = dim(dat)[2], nc = dim(dat)[2]):
    partial argument match of 'nr' to 'nrow'
    infocent: warning in matrix(0, nr = dim(dat)[2], nc = dim(dat)[2]):
    partial argument match of 'nc' to 'ncol'
    maxflow: warning in matrix(nr = length(src), nc = length(sink)):
    partial argument match of 'nr' to 'nrow'
    maxflow: warning in matrix(nr = length(src), nc = length(sink)):
    partial argument match of 'nc' to 'ncol'
    netlm : gfit: warning in matrix(x, nc = 1): partial argument match of
    'nc' to 'ncol'
    netlm: warning in rgraph(n, tp = gden(g[[i + 1]], mode = mode, diag =
    diag), mode = mode, diag = diag): partial argument match of 'tp' to
    'tprob'
    netlogit : gfit: warning in matrix(x, nc = 1): partial argument match
    of 'nc' to 'ncol'
    netlogit : gfitlm: warning in matrix(x, nc = 1): partial argument match
    of 'nc' to 'ncol'
    netlogit: warning in rgraph(n, tp = gden(g[[i + 1]], mode = mode, diag
    = diag), mode = mode, diag = diag): partial argument match of 'tp' to
    'tprob'
    plot.lnam: warning in matrix(0, nc = x$df.total, nr = x$df.total):
    partial argument match of 'nr' to 'nrow'
    plot.lnam: warning in matrix(0, nc = x$df.total, nr = x$df.total):
    partial argument match of 'nc' to 'ncol'
    print.bn: warning in matrix(c(x$d, x$pi, x$sigma, x$rho), nc = 1):
    partial argument match of 'nc' to 'ncol'
    print.netlm: warning in formatC(1 - pf(fstatistic[1], fstatistic[2],
    fstatistic[3]), dig = 4): partial argument match of 'dig' to 'digits'
    print.summary.bn: warning in matrix(c(x$d, x$pi, x$sigma, x$rho), nc =
    1): partial argument match of 'nc' to 'ncol'
    print.summary.netlm: warning in formatC(1 - pf(fstatistic[1],
    fstatistic[2], fstatistic[3]), dig = 4): partial argument match of
    'dig' to 'digits'
    rgnm: warning in matrix(nr = 0, nc = 3): partial argument match of 'nr'
    to 'nrow'
    rgnm: warning in matrix(nr = 0, nc = 3): partial argument match of 'nc'
    to 'ncol'
    rgnm: warning in matrix(c(1, 1, 1), nr = 1, nc = 3): partial argument
    match of 'nr' to 'nrow'
    rgnm: warning in matrix(c(1, 1, 1), nr = 1, nc = 3): partial argument
    match of 'nc' to 'ncol'
    triad.census: warning in matrix(nr = length(dat), nc = length(tc)):
    partial argument match of 'nr' to 'nrow'
    triad.census: warning in matrix(nr = length(dat), nc = length(tc)):
    partial argument match of 'nc' to 'ncol'
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking examples ... SKIPPED
  • checking PDF version of manual ... OK