Check results for 'sm'

using R version 2.15.0 (2012-03-30)
using platform: i686-pc-linux-gnu (32-bit)
using session charset: UTF-8
checking for file ‘sm/DESCRIPTION’ ... OK
this is package ‘sm’ version ‘2.2-4.1’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package ‘sm’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
addplot: no visible binding for '<<-' assignment to ‘xyzcheck’
addplot: no visible binding for '<<-' assignment to ‘llong’
addplot: no visible binding for global variable ‘xyzcheck’
addplot: no visible binding for '<<-' assignment to ‘llat’
addplot: no visible binding for global variable ‘llat’
addplot: no visible binding for '<<-' assignment to ‘X’
addplot: no visible binding for global variable ‘llong’
addplot: no visible binding for '<<-' assignment to ‘Y’
addplot: no visible binding for global variable ‘X’
addplot: no visible binding for global variable ‘Y’
britmap: no visible binding for global variable ‘britpts’
britmap: no visible binding for global variable ‘britlat’
britmap: no visible binding for global variable ‘britlong’
change: no visible binding for '<<-' assignment to ‘theta’
change: no visible binding for global variable ‘theta’
change: no visible binding for '<<-' assignment to ‘phi’
change: no visible binding for global variable ‘phi’
cv: no visible binding for global variable ‘h.weights’
h.select: no visible binding for global variable ‘nbins’
hidplot: no visible binding for '<<-' assignment to ‘X’
hidplot: no visible binding for '<<-' assignment to ‘Y’
hidplot: no visible binding for global variable ‘X’
hidplot: no visible binding for global variable ‘Y’
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inctheta: no visible binding for '<<-' assignment to ‘theta’
inctheta: no visible binding for global variable ‘theta’
latlines: no visible binding for '<<-' assignment to ‘xyzcheck’
latlines: no visible binding for global variable ‘xyzcheck’
latlines.e: no visible binding for '<<-' assignment to ‘xyzcheck’
latlines.e: no visible binding for global variable ‘xyzcheck’
longlines: no visible binding for '<<-' assignment to ‘xyzcheck’
longlines: no visible binding for global variable ‘xyzcheck’
longlines.e: no visible binding for '<<-' assignment to ‘xyzcheck’
longlines.e: no visible binding for global variable ‘xyzcheck’
nise: no visible binding for global variable ‘nbins’
nise: no visible binding for global variable ‘hmult’
plot2: no visible binding for '<<-' assignment to ‘xyzcheck’
plot2: no visible binding for '<<-' assignment to ‘long2’
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plot2: no visible binding for '<<-' assignment to ‘lat2’
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plot2: no visible binding for global variable ‘long2’
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plot2d: no visible binding for '<<-' assignment to ‘xyzcheck’
plot2d: no visible binding for '<<-' assignment to ‘llong’
plot2d: no visible binding for global variable ‘xyzcheck’
plot2d: no visible binding for '<<-' assignment to ‘llat’
plot2d: no visible binding for '<<-' assignment to ‘invislong’
plot2d: no visible binding for '<<-' assignment to ‘invislat’
plot2d: no visible binding for global variable ‘llat’
plot2d: no visible binding for global variable ‘invislong’
plot2d: no visible binding for global variable ‘invislat’
plot2d: no visible binding for '<<-' assignment to ‘X’
plot2d: no visible binding for global variable ‘llong’
plot2d: no visible binding for '<<-' assignment to ‘Y’
plot2d: no visible binding for global variable ‘X’
plot2d: no visible binding for global variable ‘Y’
replot.density2: no visible binding for global variable ‘smplot’
replot.density3: no visible binding for global variable ‘smplot’
replot.smooth2: no visible binding for global variable ‘smplot’
rp.density1: no visible binding for global variable ‘display’
rp.density1: no visible binding for global variable ‘se’
rp.density1: no visible binding for global variable ‘panel.plot’
rp.density1: no visible binding for global variable ‘method’
rp.density1: no visible binding for global variable ‘h.manual’
rp.density2: no visible binding for global variable ‘se’
rp.density2: no visible binding for global variable ‘test’
rp.density2: no visible binding for global variable ‘display’
rp.density2: no visible binding for global variable ‘panel.plot’
rp.density2: no visible binding for global variable ‘smplot’
rp.density2: no visible binding for global variable ‘method’
rp.density2: no visible binding for global variable ‘h.manual’
rp.density2: no visible binding for global variable ‘theta’
rp.density2: no visible binding for global variable ‘phi’
rp.density3: no visible binding for global variable ‘se’
rp.density3: no visible binding for global variable ‘test’
rp.density3: no visible binding for global variable ‘display’
rp.density3: no visible binding for global variable ‘smplot’
rp.density3: no visible binding for global variable ‘method’
rp.density3: no visible binding for global variable ‘h.manual’
rp.smooth1: no visible binding for global variable ‘se’
rp.smooth1: no visible binding for global variable ‘test’
rp.smooth1: no visible binding for global variable ‘panel.plot’
rp.smooth1: no visible binding for global variable ‘method’
rp.smooth1: no visible binding for global variable ‘h.manual’
rp.smooth2: no visible binding for global variable ‘se’
rp.smooth2: no visible binding for global variable ‘test’
rp.smooth2: no visible binding for global variable ‘display’
rp.smooth2: no visible binding for global variable ‘panel.plot’
rp.smooth2: no visible binding for global variable ‘smplot’
rp.smooth2: no visible binding for global variable ‘method’
rp.smooth2: no visible binding for global variable ‘h.manual’
rp.smooth2: no visible binding for global variable ‘theta’
rp.smooth2: no visible binding for global variable ‘phi’
sig.trace: no visible binding for global variable ‘display’
sm.ancova: no visible binding for global variable ‘nbins’
sm.ancova: no visible binding for global variable ‘band’
sm.ancova: no visible binding for global variable ‘display’
sm.ancova: no visible binding for global variable ‘ngrid’
sm.ancova: no visible binding for global variable ‘xlab’
sm.ancova: no visible binding for global variable ‘ylab’
sm.ancova: no visible binding for global variable ‘xlim’
sm.ancova: no visible binding for global variable ‘ylim’
sm.binomial: no visible binding for global variable ‘ngrid’
sm.binomial: no visible binding for global variable ‘ylim’
sm.binomial: no visible binding for global variable ‘nbins’
sm.binomial: no visible binding for global variable ‘eval.points’
sm.binomial: no visible binding for global variable ‘ndim’
sm.binomial: no visible binding for global variable ‘xlab’
sm.binomial: no visible binding for global variable ‘ylab’
sm.density: no visible binding for global variable ‘nbins’
sm.density: no visible binding for global variable ‘delta’
sm.density: warning in h.select(x = x, y = NA, weight = weights, ...):
partial argument match of 'weight' to 'weights'
sm.density: no visible binding for global variable ‘xlab’
sm.density: no visible binding for global variable ‘ylab’
sm.density: no visible binding for global variable ‘zlab’
sm.density.1d: no visible binding for global variable ‘display’
sm.density.1d: no visible binding for global variable ‘col.band’
sm.density.1d: no visible binding for global variable ‘col.points’
sm.density.1d: no visible binding for global variable ‘ngrid’
sm.density.1d: no visible binding for global variable ‘h.weights’
sm.density.1d: no visible binding for global variable ‘xlim’
sm.density.1d: no visible binding for global variable ‘yht’
sm.density.1d: no visible binding for global variable ‘ylim’
sm.density.2d: no visible binding for global variable ‘ngrid’
sm.density.2d: no visible binding for global variable ‘xlab’
sm.density.2d: no visible binding for global variable ‘ylab’
sm.density.2d: no visible binding for global variable ‘zlab’
sm.density.2d: no visible binding for global variable ‘xlim’
sm.density.2d: no visible binding for global variable ‘ylim’
sm.density.2d: no visible binding for global variable ‘eval.points’
sm.density.2d: no visible binding for global variable ‘h.weights’
sm.density.3d: no visible binding for global variable ‘ngrid’
sm.density.3d: no visible binding for global variable ‘xlab’
sm.density.3d: no visible binding for global variable ‘ylab’
sm.density.3d: no visible binding for global variable ‘zlab’
sm.density.3d: no visible binding for global variable ‘xlim’
sm.density.3d: no visible binding for global variable ‘ylim’
sm.density.3d: no visible binding for global variable ‘zlim’
sm.density.3d: no visible binding for global variable ‘eval.points’
sm.density.3d: no visible binding for global variable ‘h.weights’
sm.density.compare: no visible binding for global variable ‘display’
sm.density.compare: no visible binding for global variable ‘xlab’
sm.density.compare: no visible binding for global variable ‘ylab’
sm.density.eval.1d: no visible binding for global variable
‘eval.points’
sm.density.eval.2d: no visible binding for global variable ‘xlim’
sm.density.eval.2d: no visible binding for global variable ‘ylim’
sm.density.eval.2d: no visible binding for global variable ‘ngrid’
sm.density.eval.3d: no visible binding for global variable ‘xlim’
sm.density.eval.3d: no visible binding for global variable ‘ylim’
sm.density.eval.3d: no visible binding for global variable ‘zlim’
sm.density.eval.3d: no visible binding for global variable ‘ngrid’
sm.density.positive.1d: no visible binding for global variable ‘xlim’
sm.density.positive.2d: no visible binding for global variable
‘eval.points’
sm.density.positive.grid: no visible binding for global variable
‘delta’
sm.discontinuity: no visible binding for global variable ‘display’
sm.discontinuity: no visible binding for global variable ‘se’
sm.discontinuity: no visible binding for global variable ‘band’
sm.discontinuity: no visible binding for global variable ‘test’
sm.discontinuity: no visible binding for global variable ‘ngrid’
sm.discontinuity: no visible binding for global variable ‘xlab’
sm.discontinuity: no visible binding for global variable ‘ylab’
sm.discontinuity: no visible binding for global variable ‘xlim’
sm.discontinuity: no visible binding for global variable ‘ylim’
sm.monotonicity: no visible binding for global variable ‘xlab’
sm.monotonicity: no visible binding for global variable ‘ylab’
sm.monotonicity: no visible binding for global variable ‘xlim’
sm.monotonicity: no visible binding for global variable ‘ylim’
sm.poisson: no visible binding for global variable ‘ngrid’
sm.poisson: no visible binding for global variable ‘ylim’
sm.poisson: no visible binding for global variable ‘pch’
sm.poisson: no visible binding for global variable ‘nbins’
sm.poisson: no visible binding for global variable ‘xlab’
sm.poisson: no visible binding for global variable ‘ylab’
sm.poisson: no visible binding for global variable ‘eval.points’
sm.regression: no visible binding for global variable ‘nbins’
sm.regression: no visible binding for global variable ‘test’
sm.regression: no visible binding for global variable ‘h.weights’
sm.regression: no visible binding for global variable ‘xlab’
sm.regression: no visible binding for global variable ‘ylab’
sm.regression: no visible binding for global variable ‘ngrid’
sm.regression: no visible binding for global variable ‘cex’
sm.regression: no visible binding for global variable ‘zlab’
sm.regression.1d: no visible binding for global variable ‘ngrid’
sm.regression.1d: no visible binding for global variable ‘xlim’
sm.regression.1d: no visible binding for global variable ‘ylim’
sm.regression.1d: no visible binding for global variable ‘display’
sm.regression.1d: no visible binding for global variable ‘col.band’
sm.regression.1d: no visible binding for global variable ‘col.points’
sm.regression.1d: no visible binding for global variable ‘se’
sm.regression.2d: no visible binding for global variable ‘h.weights’
sm.regression.2d: no visible binding for global variable ‘display’
sm.regression.2d: no visible binding for global variable ‘band’
sm.regression.2d: no visible binding for global variable ‘xlim’
sm.regression.2d: no visible binding for global variable ‘zlim’
sm.regression.2d: no visible binding for global variable ‘eval.points’
sm.regression.2d: no visible binding for global variable ‘ylim’
sm.regression.autocor: no visible binding for global variable ‘display’
sm.regression.test: warning in sm.weight2(x, x, h, weights = weights,
option = opt): partial argument match of 'option' to 'options'
sm.sigma: no visible binding for global variable ‘nbins’
sm.sigma2: warning in sm.weight2(X, X, h, option = list()): partial
argument match of 'option' to 'options'
sm.sphere: no visible binding for global variable ‘lat2’
sm.sphere: no visible binding for global variable ‘long2’
sm.survival: no visible binding for global variable ‘display’
sm.survival: no visible binding for global variable ‘ngrid’
sm.survival: no visible binding for global variable ‘xlab’
sm.survival: no visible binding for global variable ‘ylab’
sm.variogram: no visible binding for global variable ‘display’
sm.variogram: no visible binding for global variable ‘ngrid’
sm.variogram: no visible binding for global variable ‘band’
sm.variogram: no visible binding for global variable ‘test’
sm.variogram: no visible binding for global variable ‘nbins’
sm.variogram: no visible binding for global variable ‘eval.points’
sm.variogram: no visible binding for global variable ‘xlab’
sm.variogram: no visible binding for global variable ‘ylab’
sm.variogram: no visible binding for global variable ‘xlim’
sm.variogram: no visible binding for global variable ‘ylim’
sphimage: no visible binding for '<<-' assignment to ‘fmat’
sphimage: no visible binding for global variable ‘fmat’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking examples ... ERROR
Running examples in ‘sm-Ex.R’ failed
The error most likely occurred in:

> ### Name: sm.surface3d
> ### Title: Adding a regression surface to an rgl plot.
> ### Aliases: sm.surface3d
> ### Keywords: nonparametric regression smooth
>
> ### ** Examples
>
> provide.data(trawl)
Data file being loaded
Trawl data

These data refer to a survey of the fauna on the sea bed lying
between the coast of northern Queensland and the Great Barrier Reef.
The sampling region covered a zone which was closed to commercial
fishing, as well as neighbouring zones where fishing was permitted.

The variables are:
Zone: an indicator for the closed (1) and open (0) zones
Year: an indicator of 1992 (0) or 1993 (1)
Latitude: latitude of the sampling position
Longitude: longitude of the sampling position
Depth: bottom depth
Score1: catch score 1
Score2: catch score 2

Source: The details of the survey and an analysis of the data are provided
by Poiner et al. (1997), The effects of prawn trawling in the
far northern section of the Great Barrier Reef, CSIRO Division
of Marine Research, Queensland Dept. of Primary Industries.

> Zone93 <- (Year == 1 & Zone == 1)
> Position <- cbind(Longitude - 143, Latitude)
> model1 <- sm.regression(Position[Zone93,], Score1[Zone93],
+ h= c(0.1, 0.1), display = "rgl", xlab="Longitude - 143")
Loading required package: rgl
Loading required package: rpanel
Loading required package: tcltk
Package `rpanel', version 1.0-6
type help(rpanel) for summary information
Error in rgl.open() : rgl.open failed
Calls: sm.regression -> sm.regression.2d -> rp.plot3d -> rgl.open
Execution halted