Check results for 'robustbase'

using R version 2.15.0 (2012-03-30)
using platform: i686-pc-linux-gnu (32-bit)
using session charset: UTF-8
checking for file ‘robustbase/DESCRIPTION’ ... OK
this is package ‘robustbase’ version ‘0.9-1’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package ‘robustbase’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
.vcov.w: no visible binding for global variable ‘r’
glmrobMqle: no visible binding for global variable ‘residP’
glmrobMqle: no visible binding for global variable ‘residPS’
glmrobMqle: no visible binding for global variable ‘dmu.deta’
lmrob.ggw.ac: no visible binding for global variable ‘r’
lmrob.ggw.bp: no visible binding for global variable ‘r’
lmrob.kappa : fun.min: no visible global function definition for ‘psi’
lmrob.kappa : fun.min: no visible binding for global variable ‘r’
lmrob.kappa : fun.min: no visible global function definition for ‘wgt’
lmrob.tau.fast.coefs: no visible binding for global variable ‘r’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable compilation flags in Makevars ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking examples ... [8s/8s] OK
checking for unstated dependencies in tests ... OK
checking tests ... [48s/49s] OK
Running ‘LTS-specials.R’ [0s/0s]
Running ‘MCD-specials.R’ [0s/0s]
Comparing ‘MCD-specials.Rout’ to ‘MCD-specials.Rout.save’ ... OK
Running ‘OGK-ex.R’ [1s/1s]
Comparing ‘OGK-ex.Rout’ to ‘OGK-ex.Rout.save’ ... OK
Running ‘binom-ni-small.R’ [1s/1s]
Comparing ‘binom-ni-small.Rout’ to ‘binom-ni-small.Rout.save’ ... OK
Running ‘binom-no-x.R’ [0s/0s]
Running ‘exact-fit-categorical.R’ [0s/0s]
Running ‘glmrob-1.R’ [1s/1s]
Running ‘glmrob-specials.R’ [1s/1s]
Running ‘huber-etc.R’ [0s/0s]
Comparing ‘huber-etc.Rout’ to ‘huber-etc.Rout.save’ ... OK
Running ‘lmrob-data.R’ [1s/1s]
Comparing ‘lmrob-data.Rout’ to ‘lmrob-data.Rout.save’ ... OK
Running ‘lmrob-ex12.R’ [2s/2s]
Running ‘lmrob-methods.R’ [1s/1s]
Comparing ‘lmrob-methods.Rout’ to ‘lmrob-methods.Rout.save’ ... OK
Running ‘lmrob-psifns.R’ [8s/8s]
Comparing ‘lmrob-psifns.Rout’ to ‘lmrob-psifns.Rout.save’ ... OK
Running ‘m-s-estimator.R’ [1s/1s]
Comparing ‘m-s-estimator.Rout’ to ‘m-s-estimator.Rout.save’ ...113,117c113,117
< Min. :-396.71 Min. :-39.00 Min. :-35.8704 Min. :16.30
< 1st Qu.:-223.37 1st Qu.:-23.55 1st Qu.: -8.9603 1st Qu.:30.17
< Median :-161.10 Median :-21.28 Median : -7.2929 Median :32.52
< Mean :-160.82 Mean :-22.03 Mean : -7.8790 Mean :32.32
< 3rd Qu.:-103.36 3rd Qu.:-18.42 3rd Qu.: -5.9652 3rd Qu.:36.16
---
> Min. :-316.24 Min. :-33.92 Min. :-35.8704 Min. :16.43
> 1st Qu.:-225.08 1st Qu.:-23.56 1st Qu.: -8.9603 1st Qu.:29.92
> Median :-165.13 Median :-21.67 Median : -7.1102 Median :32.20
> Mean :-162.74 Mean :-22.07 Mean : -8.1134 Mean :32.12
> 3rd Qu.:-103.36 3rd Qu.:-18.47 3rd Qu.: -5.9652 3rd Qu.:35.72
120,125c120,125
< Min. :-0.038082 Min. :0.01744 Min. :0.2752 Min. :29.79
< 1st Qu.:-0.005917 1st Qu.:0.03960 1st Qu.:0.4956 1st Qu.:30.42
< Median : 0.021791 Median :0.04717 Median :0.6381 Median :31.00
< Mean : 0.026859 Mean :0.04611 Mean :0.6227 Mean :30.95
< 3rd Qu.: 0.055614 3rd Qu.:0.05211 3rd Qu.:0.7389 3rd Qu.:31.35
< Max. : 0.103367 Max. :0.06765 Max. :1.1121 Max. :32.06
---
> Min. :-0.03808 Min. :0.02111 Min. :0.2555 Min. :29.79
> 1st Qu.:-0.00397 1st Qu.:0.03927 1st Qu.:0.4956 1st Qu.:30.42
> Median : 0.02142 Median :0.04717 Median :0.6404 Median :30.91
> Mean : 0.02678 Mean :0.04621 Mean :0.6275 Mean :30.94
> 3rd Qu.: 0.05561 3rd Qu.:0.05211 3rd Qu.:0.7506 3rd Qu.:31.36
> Max. : 0.10427 Max. :0.06938 Max. :0.9172 Max. :32.18
272,277c272,277
< Min. :-396.7 Min. :-39.00 Min. :-36.478 Min. :16.30
< 1st Qu.:-222.4 1st Qu.:-23.02 1st Qu.: -8.956 1st Qu.:27.96
< Median :-159.9 Median :-20.05 Median : -7.791 Median :30.52
< Mean :-157.3 Mean :-20.34 Mean : -8.832 Mean :30.83
< 3rd Qu.:-102.3 3rd Qu.:-17.04 3rd Qu.: -6.842 3rd Qu.:32.75
< Max. : 101.1 Max. :-12.06 Max. : -4.032 Max. :42.23
---
> Min. :-316.3 Min. :-30.56 Min. :-36.501 Min. :16.43
> 1st Qu.:-224.2 1st Qu.:-23.09 1st Qu.: -8.956 1st Qu.:28.05
> Median :-160.7 Median :-20.72 Median : -7.693 Median :31.21
> Mean :-159.9 Mean :-20.52 Mean : -8.873 Mean :31.03
> 3rd Qu.:-102.7 3rd Qu.:-17.40 3rd Qu.: -6.819 3rd Qu.:33.04
> Max. : 101.7 Max. :-12.06 Max. : -4.032 Max. :42.23
279,284c279,284
< Min. :-0.02141 Min. :0.01464 Min. :0.2043 Min. :29.79
< 1st Qu.: 0.02103 1st Qu.:0.03865 1st Qu.:0.4956 1st Qu.:30.31
< Median : 0.04639 Median :0.04182 Median :0.6356 Median :30.57
< Mean : 0.04123 Mean :0.04340 Mean :0.6224 Mean :30.72
< 3rd Qu.: 0.06115 3rd Qu.:0.04795 3rd Qu.:0.7295 3rd Qu.:31.04
< Max. : 0.09102 Max. :0.06476 Max. :1.1121 Max. :32.01
---
> Min. :-0.02141 Min. :0.01459 Min. :0.2034 Min. :29.79
> 1st Qu.: 0.02071 1st Qu.:0.03924 1st Qu.:0.5007 1st Qu.:30.37
> Median : 0.03911 Median :0.04493 Median :0.6381 Median :30.57
> Mean : 0.03852 Mean :0.04372 Mean :0.6310 Mean :30.70
> 3rd Qu.: 0.06021 3rd Qu.:0.04811 3rd Qu.:0.7508 3rd Qu.:30.96
> Max. : 0.09102 Max. :0.06367 Max. :0.9172 Max. :31.84
299,301c299,301
< Step 338: new candidate with sc = 31.34552
< Finished M-S subsampling with scale = 31.34552
< b1: -5.445072 7.825257 0.178215 7.656800
---
> Step 338: new candidate with sc = 31.51188
> Finished M-S subsampling with scale = 31.51188
> b1: -5.445072 7.825257 1.756708 7.656800
304,305c304,307
< Refinement step 6: better fit, scale: 31.34273
< Refinement step 7: better fit, scale: 31.33741
---
> Refinement step 1: better fit, scale: 31.48594
> Refinement step 4: better fit, scale: 31.38752
> Refinement step 5: better fit, scale: 31.34287
> Refinement step 6: better fit, scale: 31.32908
307,308c309,310
< b1: -111.930390 -14.841307 -9.456777 27.431135
< b2: 0.067235 0.036026 0.536591
---
> b1: -113.528805 -14.858187 -9.426368 27.485299
> b2: 0.066846 0.036134 0.540701
Running ‘mc-etc.R’ [0s/1s]
Comparing ‘mc-etc.Rout’ to ‘mc-etc.Rout.save’ ...35c35
< --> mc(rlnorm(4)) = -0.000000
---
> --> mc(rlnorm(4)) = 0.000000
Running ‘mc-strict.R’ [6s/6s]
Running ‘nlrob-tst.R’ [1s/1s]
Running ‘plot-ex.R’ [1s/1s]
Running ‘poisson-ex.R’ [1s/1s]
Running ‘psi-rho-etc.R’ [0s/0s]
Comparing ‘psi-rho-etc.Rout’ to ‘psi-rho-etc.Rout.save’ ... OK
Running ‘small-sample.R’ [6s/6s]
Comparing ‘small-sample.Rout’ to ‘small-sample.Rout.save’ ... OK
Running ‘subsample.R’ [8s/8s]
Running ‘tlts.R’ [1s/1s]
Comparing ‘tlts.Rout’ to ‘tlts.Rout.save’ ... OK
Running ‘tmcd.R’ [3s/3s]
Comparing ‘tmcd.Rout’ to ‘tmcd.Rout.save’ ... OK
Running ‘wgt-himed-xtra.R’ [3s/3s]
Running ‘wgt-himed.R’ [0s/0s]
Comparing ‘wgt-himed.Rout’ to ‘wgt-himed.Rout.save’ ... OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [34s/34s] OK
checking re-building of vignette PDFs ... [37s/38s] OK
checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/hornik/tmp/R.check/r-release/Work/PKGS/robustbase.Rcheck/00check.log’
for details.