• using R version 2.7.1 (2008-06-23)
  • using session charset: UTF-8
  • checking for file 'robust/DESCRIPTION' ... OK
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  • this is package 'robust' version '0.3-0'
  • checking package dependencies ... OK
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  • checking if this is a source package ... OK
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  • checking whether package 'robust' can be installed ... OK
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  • checking package directory ... OK
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  • checking for portable file names ... OK
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  • checking for sufficient/correct file permissions ... OK
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  • checking DESCRIPTION meta-information ... OK
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  • checking top-level files ... OK
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  • checking index information ... OK
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  • checking package subdirectories ... OK
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  • checking R files for non-ASCII characters ... OK
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  • checking R files for syntax errors ... OK
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  • checking whether the package can be loaded ... OK
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  • checking whether the package can be loaded with stated dependencies ... OK
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  • checking for unstated dependencies in R code ... OK
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  • checking S3 generic/method consistency ... OK
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  • checking replacement functions ... OK
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  • checking foreign function calls ... OK
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  • checking R code for possible problems ... NOTE
    anova.glmRob: no visible global function definition for ‘deviance.lm’
    anova.glmRoblist: no visible global function definition for
    ‘deviance.lm’
    anova.lmRob: no visible global function definition for ‘chb’
    glmRob: no visible binding for global variable ‘response’
    glmRob.glmdev: no visible binding for global variable ‘ics’
    glmRob.mallows: possible error in glm.fit(x[, "(Intercept)", drop =
    FALSE], y, w, offset = offset, family = family, null.dev = NULL):
    unused argument(s) (null.dev = NULL)
    lmfmRespVsFittedPlot: no visible binding for global variable ‘response’
    lmfmResQQPlot: multiple local function definitions for ‘panel.special’
    with different formal arguments
    lmRob: no visible binding for global variable ‘response’
    lmRob.const: no visible global function definition for ‘chb’
    lmRob.fit.compute: no visible global function definition for
    ‘guiDisplayDialog’
    lmRob.fit.compute: no visible binding for global variable ‘yes.p’
    lmRob.fit.compute: no visible global function definition for
    ‘lmRob.genetic.control’
    lmRob.fit.compute: no visible global function definition for ‘lmRob.ga’
    lmRob.fit.compute: no visible global function definition for ‘chb’
    plot.covfm: no visible global function definition for ‘guiModify’
    plot.glmfm: no visible global function definition for ‘guiModify’
    plot.lmfm: no visible global function definition for ‘guiModify’
    rb: no visible binding for global variable ‘response’
    step.lmRob: no visible global function definition for ‘rebld.formula’
    test.lmRob: no visible binding for global variable ‘response’
    test.lmRob: no visible global function definition for ‘samp.permute’
    test.lmRob: no visible global function definition for ‘chb’
  • checking Rd files ... OK
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  • checking Rd cross-references ... OK
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  • checking for missing documentation entries ... OK
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  • checking for code/documentation mismatches ... OK
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  • checking Rd \usage sections ... NOTE
    S3 methods shown with full name in documentation object 'anova.glmRob':
    anova.glmRoblist

    S3 methods shown with full name in documentation object 'anova.lmRob':
    anova.lmRoblist

    S3 methods shown with full name in documentation object 'plot.glmfm':
    plot.glmfm

    S3 methods shown with full name in documentation object 'predict.glmRob':
    predict.glmRob

    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter 'Writing R documentation files' in manual 'Writing R
    Extensions'.
  • checking data for non-ASCII characters ... OK
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  • checking line endings in C/C++/Fortran sources/headers ... OK
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  • checking line endings in Makefiles ... OK
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  • checking for portable compilation flags in Makevars ... OK
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  • checking for portable use of $BLAS_LIBS ... OK
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  • creating robust-Ex.R ... OK
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  • checking examples ... ERROR
    Running examples in 'robust-Ex.R' failed.
    The error most likely occurred in:

    > ### * anova.glmRob
    >
    > flush(stderr()); flush(stdout())
    >
    > ### Name: anova.glmRob
    > ### Title: ANOVA for Robust Generalized Linear Model Fits
    > ### Aliases: anova.glmRob anova.glmRoblist
    > ### Keywords: robust regression methods
    >
    > ### ** Examples
    >
    > data(breslow.dat)
    > bres.int <- glmRob(sumY ~ Age10 + Base4*Trt, family = poisson(), data = breslow.dat)
    Warning in any(offset) : coercing argument of type 'double' to logical
    > bres.main <- glmRob(sumY ~ Age10 + Base4 + Trt, family = poisson(), data = breslow.dat)
    Warning in any(offset) : coercing argument of type 'double' to logical
    > anova(bres.int)
    Warning in any(offset) : coercing argument of type 'double' to logical
    Warning in any(offset) : coercing argument of type 'double' to logical
    Warning in any(offset) : coercing argument of type 'double' to logical
    Analysis of Deviance Table

    poisson model

    Response: sumY

    Terms added sequentially (first to last)
    Df Deviance Resid. Df Resid. Dev
    NULL 58 11983.1
    Age10 1 9125.7 57 2857.5
    Base4 1 1215.9 56 1641.6
    Trt 1 -1331.2 55 2972.8
    Base4:Trt 1 54
    > anova(bres.int, bres.main)
    Error in r[i1] - r[-length(r):-(length(r) - lag + 1)] :
    non-numeric argument to binary operator
    Calls: anova ... anova.glmRob -> anova.glmRoblist -> diff -> diff.default
    Execution halted