• using R version 2.15.0 (2012-03-30)
  • using platform: i686-pc-linux-gnu (32-bit)
  • using session charset: UTF-8
  • checking for file ‘rgenoud/DESCRIPTION’ ... OK
  • this is package ‘rgenoud’ version ‘5.7-3’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package ‘rgenoud’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    File ‘rgenoud/R/zzz.R’:
    .onAttach calls:
    cat(paste("## rgenoud (Version ", version, ", Build Date: ", BuildDate, ")\n", sep = ""))
    cat("## See http://sekhon.berkeley.edu/rgenoud for additional documentation.\n")

    Package startup functions should use ‘packageStartupMessage’ to
    generate messages.
    See section ‘Good practice’ in ?.onAttach.

    .onAttach: warning in packageDescription("rgenoud", lib = rgenoudLib):
    partial argument match of 'lib' to 'lib.loc'
    genoud : gr: warning in assign("x", par, env = genoud.wrapper101.env):
    partial argument match of 'env' to 'envir'
    genoud : gr: warning in assign("helper", helper, env =
    genoud.wrapper101.env): partial argument match of 'env' to 'envir'
    genoud : gr: warning in assign("FiniteBadFitValue", FiniteBadFitValue,
    env = genoud.wrapper101.env): partial argument match of 'env' to
    'envir'
    genoud : fnLexicalSort: no visible binding for global variable ‘indx’
    genoud: multiple local function definitions for ‘fn1.bfgs’ with
    different formal arguments
    genoud: multiple local function definitions for ‘gr1’ with different
    formal arguments
    genoud: multiple local function definitions for ‘hess.fn’ with
    different formal arguments
    genoud_transform : gr: warning in assign("x", par, env =
    genoud.wrapper101.env): partial argument match of 'env' to 'envir'
    genoud_transform : gr: warning in assign("helper", helper, env =
    genoud.wrapper101.env): partial argument match of 'env' to 'envir'
    genoud_transform : gr: warning in assign("FiniteBadFitValue",
    FiniteBadFitValue, env = genoud.wrapper101.env): partial argument
    match of 'env' to 'envir'
    genoud_transform : fnLexicalSort: no visible binding for global
    variable ‘indx’
    genoud_transform: multiple local function definitions for ‘fn1.bfgs’
    with different formal arguments
    genoud_transform: multiple local function definitions for ‘gr1’ with
    different formal arguments
    Found .Internal calls in the following functions:
    ‘genoud’ ‘genoud_transform’
    with calls to .Internal functions
    ‘optimhess’

    Packages should not call .Internal(): it is not part of the API, for
    use only by R itself and subject to change without notice.
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... NOTE
    File ‘/home/hornik/tmp/R.check/r-release/Work/build/Packages/rgenoud/libs/rgenoud.so’:
    Found ‘exit’, possibly from ‘exit’ (C)
    Object: ‘evaluate.o’
    Found ‘printf’, possibly from ‘printf’ (C)
    Object: ‘gradient.o’
    Found ‘putchar’, possibly from ‘putchar’ (C)
    Object: ‘gradient.o’
    Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
    Object: ‘gradient.o’
    Found ‘stderr’, possibly from ‘stderr’ (C)
    Objects: ‘evaluate.o’, ‘genoud.o’, ‘math.o’, ‘operators.o’,
    ‘print_format.o’
    Found ‘stdout’, possibly from ‘stdout’ (C)
    Objects: ‘evaluate.o’, ‘genoud.o’, ‘gradient.o’, ‘math.o’,
    ‘operators.o’, ‘print_format.o’

    Compiled code should not call functions which might terminate R nor
    write to stdout/stderr instead of to the console.

    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... NOTE
    The following directories should probably not be installed:
    ‘Figures’

    Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
    or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
  • checking examples ... [5s/6s] OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [20s/20s] OK
    Running ‘tests.R’ [20s/20s]
    Comparing ‘tests.Rout’ to ‘tests.Rout.save’ ...11c11
    < Fri May 25 04:46:10 2012
    ---
    > Wed May 4 00:50:43 2011
    69,71c69,71
    < mean............ 6.096275e-01
    < variance........ 4.272226e-01
    < #unique......... 405, #Total UniqueCount: 2725
    ---
    > mean............ 6.189650e-01
    > variance........ 4.002499e-01
    > #unique......... 427, #Total UniqueCount: 2747
    74,75c74,75
    < mean............ 1.890489e+00
    < variance........ 1.054702e+01
    ---
    > mean............ 1.679966e+00
    > variance........ 1.119450e+01
    79,81c79,81
    < mean............ 6.512111e-01
    < variance........ 3.851790e-01
    < #unique......... 416, #Total UniqueCount: 3141
    ---
    > mean............ 6.092758e-01
    > variance........ 4.169687e-01
    > #unique......... 431, #Total UniqueCount: 3178
    84,85c84,85
    < mean............ 1.361283e+00
    < variance........ 7.094033e+00
    ---
    > mean............ 1.367527e+00
    > variance........ 6.934006e+00
    89,91c89,91
    < mean............ 5.889137e-01
    < variance........ 4.540842e-01
    < #unique......... 425, #Total UniqueCount: 3566
    ---
    > mean............ 6.156435e-01
    > variance........ 4.200404e-01
    > #unique......... 423, #Total UniqueCount: 3601
    94,95c94,95
    < mean............ 1.302953e+00
    < variance........ 6.689053e+00
    ---
    > mean............ 1.366945e+00
    > variance........ 6.752356e+00
    99,101c99,101
    < mean............ 6.736725e-01
    < variance........ 3.635173e-01
    < #unique......... 387, #Total UniqueCount: 3953
    ---
    > mean............ 6.356096e-01
    > variance........ 4.049092e-01
    > #unique......... 425, #Total UniqueCount: 4026
    104,105c104,105
    < mean............ 1.366363e+00
    < variance........ 5.366901e+00
    ---
    > mean............ 1.393369e+00
    > variance........ 6.402281e+00
    109,111c109,111
    < mean............ 6.431350e-01
    < variance........ 3.888953e-01
    < #unique......... 406, #Total UniqueCount: 4359
    ---
    > mean............ 6.164552e-01
    > variance........ 4.133295e-01
    > #unique......... 431, #Total UniqueCount: 4457
    114,115c114,115
    < mean............ 1.299767e+00
    < variance........ 5.746716e+00
    ---
    > mean............ 1.211458e+00
    > variance........ 6.857465e+00
    119,121c119,121
    < mean............ 6.372908e-01
    < variance........ 3.977796e-01
    < #unique......... 403, #Total UniqueCount: 4762
    ---
    > mean............ 6.562369e-01
    > variance........ 3.846095e-01
    > #unique......... 401, #Total UniqueCount: 4858
    124,125c124,125
    < mean............ 1.311906e+00
    < variance........ 6.047898e+00
    ---
    > mean............ 1.391469e+00
    > variance........ 6.147332e+00
    129,131c129,131
    < mean............ 6.385858e-01
    < variance........ 4.078118e-01
    < #unique......... 419, #Total UniqueCount: 5181
    ---
    > mean............ 6.651051e-01
    > variance........ 3.848492e-01
    > #unique......... 403, #Total UniqueCount: 5261
    134,135c134,135
    < mean............ 1.404711e+00
    < variance........ 5.615646e+00
    ---
    > mean............ 1.330140e+00
    > variance........ 5.689063e+00
    139,141c139,141
    < mean............ 6.449885e-01
    < variance........ 3.908594e-01
    < #unique......... 421, #Total UniqueCount: 5602
    ---
    > mean............ 6.208946e-01
    > variance........ 4.056497e-01
    > #unique......... 435, #Total UniqueCount: 5696
    144,145c144,145
    < mean............ 1.304838e+00
    < variance........ 6.055993e+00
    ---
    > mean............ 1.343203e+00
    > variance........ 7.001236e+00
    149,151c149,151
    < mean............ 6.314848e-01
    < variance........ 3.932786e-01
    < #unique......... 439, #Total UniqueCount: 6041
    ---
    > mean............ 6.724621e-01
    > variance........ 3.550086e-01
    > #unique......... 419, #Total UniqueCount: 6115
    154,155c154,155
    < mean............ 1.340550e+00
    < variance........ 5.555145e+00
    ---
    > mean............ 1.282502e+00
    > variance........ 5.515707e+00
    169c169
    < Fri May 25 04:46:11 2012
    ---
    > Wed May 4 00:50:44 2011
    198c198
    < Fri May 25 04:46:11 2012
    ---
    > Wed May 4 00:50:44 2011
    238c238
    < #unique......... 626, #Total UniqueCount: 1626
    ---
    > #unique......... 627, #Total UniqueCount: 1627
    248c248
    < #unique......... 682, #Total UniqueCount: 2308
    ---
    > #unique......... 682, #Total UniqueCount: 2309
    256,258c256,258
    < mean............ -6.158385e-01
    < variance........ 4.141548e-01
    < #unique......... 410, #Total UniqueCount: 2718
    ---
    > mean............ -6.128608e-01
    > variance........ 4.144967e-01
    > #unique......... 429, #Total UniqueCount: 2738
    261,262c261,262
    < mean............ 4.050484e+00
    < variance........ 7.894210e+00
    ---
    > mean............ 4.007063e+00
    > variance........ 7.658184e+00
    266,268c266,268
    < mean............ -6.071496e-01
    < variance........ 4.209873e-01
    < #unique......... 438, #Total UniqueCount: 3156
    ---
    > mean............ -6.212577e-01
    > variance........ 4.115324e-01
    > #unique......... 437, #Total UniqueCount: 3175
    271,272c271,272
    < mean............ 4.021939e+00
    < variance........ 8.389006e+00
    ---
    > mean............ 4.165113e+00
    > variance........ 7.042534e+00
    276,278c276,278
    < mean............ -6.620590e-01
    < variance........ 3.616736e-01
    < #unique......... 429, #Total UniqueCount: 3585
    ---
    > mean............ -6.544408e-01
    > variance........ 3.750827e-01
    > #unique......... 411, #Total UniqueCount: 3586
    281,282c281,282
    < mean............ 3.979958e+00
    < variance........ 8.048846e+00
    ---
    > mean............ 4.169934e+00
    > variance........ 6.904521e+00
    286,288c286,288
    < mean............ -6.598122e-01
    < variance........ 3.765772e-01
    < #unique......... 401, #Total UniqueCount: 3986
    ---
    > mean............ -6.581255e-01
    > variance........ 3.650709e-01
    > #unique......... 417, #Total UniqueCount: 4003
    291,292c291,292
    < mean............ 4.111091e+00
    < variance........ 7.309642e+00
    ---
    > mean............ 4.216442e+00
    > variance........ 6.401695e+00
    296,298c296,298
    < mean............ -6.506197e-01
    < variance........ 3.837994e-01
    < #unique......... 433, #Total UniqueCount: 4419
    ---
    > mean............ -6.506840e-01
    > variance........ 3.775357e-01
    > #unique......... 419, #Total UniqueCount: 4422
    301,302c301,302
    < mean............ 3.986862e+00
    < variance........ 7.389448e+00
    ---
    > mean............ 3.803004e+00
    > variance........ 8.929374e+00
    306,308c306,308
    < mean............ -6.816249e-01
    < variance........ 3.558025e-01
    < #unique......... 389, #Total UniqueCount: 4808
    ---
    > mean............ -6.497109e-01
    > variance........ 3.885300e-01
    > #unique......... 403, #Total UniqueCount: 4825
    311,312c311,312
    < mean............ 4.314444e+00
    < variance........ 5.968875e+00
    ---
    > mean............ 4.103374e+00
    > variance........ 7.038492e+00
    316,318c316,318
    < mean............ -6.609985e-01
    < variance........ 3.776215e-01
    < #unique......... 405, #Total UniqueCount: 5213
    ---
    > mean............ -7.002825e-01
    > variance........ 3.359944e-01
    > #unique......... 407, #Total UniqueCount: 5232
    321,322c321,322
    < mean............ 4.149115e+00
    < variance........ 6.419488e+00
    ---
    > mean............ 4.113148e+00
    > variance........ 6.708839e+00
    326,328c326,328
    < mean............ -7.054866e-01
    < variance........ 3.220581e-01
    < #unique......... 398, #Total UniqueCount: 5611
    ---
    > mean............ -6.969895e-01
    > variance........ 3.268609e-01
    > #unique......... 398, #Total UniqueCount: 5630
    331,332c331,332
    < mean............ 4.051897e+00
    < variance........ 6.905885e+00
    ---
    > mean............ 4.218568e+00
    > variance........ 6.475102e+00
    336,338c336,338
    < mean............ -6.372628e-01
    < variance........ 3.979455e-01
    < #unique......... 435, #Total UniqueCount: 6046
    ---
    > mean............ -6.652317e-01
    > variance........ 3.542651e-01
    > #unique......... 415, #Total UniqueCount: 6045
    341,342c341,342
    < mean............ 4.074554e+00
    < variance........ 6.464851e+00
    ---
    > mean............ 4.084384e+00
    > variance........ 7.039829e+00
    356c356
    < Fri May 25 04:46:13 2012
    ---
    > Wed May 4 00:50:46 2011
    392c392
    < Fri May 25 04:46:13 2012
    ---
    > Wed May 4 00:50:46 2011
    432c432
    < #unique......... 1835, #Total UniqueCount: 4835
    ---
    > #unique......... 1836, #Total UniqueCount: 4836
    442c442
    < #unique......... 2051, #Total UniqueCount: 6886
    ---
    > #unique......... 2051, #Total UniqueCount: 6887
    450,452c450,452
    < mean............ 2.892238e-01
    < variance........ 2.834886e-02
    < #unique......... 1930, #Total UniqueCount: 8816
    ---
    > mean............ 2.864275e-01
    > variance........ 2.897977e-02
    > #unique......... 2046, #Total UniqueCount: 8933
    455,456c455,456
    < mean............ 8.976971e-01
    < variance........ 6.559784e+00
    ---
    > mean............ 8.399118e-01
    > variance........ 6.825600e+00
    460,462c460,462
    < mean............ 2.830900e-01
    < variance........ 2.963827e-02
    < #unique......... 1830, #Total UniqueCount: 10646
    ---
    > mean............ 2.838900e-01
    > variance........ 2.869139e-02
    > #unique......... 1878, #Total UniqueCount: 10811
    465,466c465,466
    < mean............ 9.209788e-01
    < variance........ 7.093196e+00
    ---
    > mean............ 8.908219e-01
    > variance........ 6.798754e+00
    470,472c470,472
    < mean............ 2.927005e-01
    < variance........ 2.727738e-02
    < #unique......... 1788, #Total UniqueCount: 12434
    ---
    > mean............ 2.901938e-01
    > variance........ 2.813199e-02
    > #unique......... 1798, #Total UniqueCount: 12609
    475,476c475,476
    < mean............ 9.232597e-01
    < variance........ 5.726659e+00
    ---
    > mean............ 8.704130e-01
    > variance........ 6.203916e+00
    480,482c480,482
    < mean............ 2.979349e-01
    < variance........ 2.611758e-02
    < #unique......... 1796, #Total UniqueCount: 14230
    ---
    > mean............ 2.921695e-01
    > variance........ 2.741696e-02
    > #unique......... 1814, #Total UniqueCount: 14423
    485,486c485,486
    < mean............ 8.551783e-01
    < variance........ 5.525685e+00
    ---
    > mean............ 8.472001e-01
    > variance........ 5.701943e+00
    490,492c490,492
    < mean............ 2.907793e-01
    < variance........ 2.782226e-02
    < #unique......... 1835, #Total UniqueCount: 16065
    ---
    > mean............ 2.880376e-01
    > variance........ 2.808988e-02
    > #unique......... 1842, #Total UniqueCount: 16265
    495,496c495,496
    < mean............ 8.153283e-01
    < variance........ 5.798830e+00
    ---
    > mean............ 8.380206e-01
    > variance........ 6.541224e+00
    500,502c500,502
    < mean............ 2.878298e-01
    < variance........ 2.813415e-02
    < #unique......... 1841, #Total UniqueCount: 17906
    ---
    > mean............ 2.860009e-01
    > variance........ 2.828495e-02
    > #unique......... 1853, #Total UniqueCount: 18118
    505,506c505,506
    < mean............ 8.619903e-01
    < variance........ 6.217931e+00
    ---
    > mean............ 8.542092e-01
    > variance........ 6.452253e+00
    510,512c510,512
    < mean............ 2.919372e-01
    < variance........ 2.700553e-02
    < #unique......... 1840, #Total UniqueCount: 19746
    ---
    > mean............ 2.942904e-01
    > variance........ 2.682284e-02
    > #unique......... 1804, #Total UniqueCount: 19922
    515,516c515,516
    < mean............ 8.663843e-01
    < variance........ 5.868741e+00
    ---
    > mean............ 8.537841e-01
    > variance........ 5.747967e+00
    520,522c520,522
    < mean............ 2.926986e-01
    < variance........ 2.639249e-02
    < #unique......... 1845, #Total UniqueCount: 21591
    ---
    > mean............ 2.903657e-01
    > variance........ 2.744221e-02
    > #unique......... 1848, #Total UniqueCount: 21770
    525,526c525,526
    < mean............ 8.272705e-01
    < variance........ 5.612883e+00
    ---
    > mean............ 8.261983e-01
    > variance........ 6.038556e+00
    530,532c530,532
    < mean............ 2.986399e-01
    < variance........ 2.579183e-02
    < #unique......... 1802, #Total UniqueCount: 23393
    ---
    > mean............ 2.983268e-01
    > variance........ 2.579515e-02
    > #unique......... 1721, #Total UniqueCount: 23491
    535,536c535,536
    < mean............ 8.347552e-01
    < variance........ 5.538380e+00
    ---
    > mean............ 8.328409e-01
    > variance........ 5.329774e+00
    545c545
    < X[ 1] : 9.995033e-01 G[ 1] : -2.873151e-09
    ---
    > X[ 1] : 9.995033e-01 G[ 1] : -1.746217e-09
    550c550
    < Fri May 25 04:46:15 2012
    ---
    > Wed May 4 00:50:48 2011
    560c560
    < [1] -2.873151e-09
    ---
    > [1] -1.746217e-09
    600c600
    < Fri May 25 04:46:15 2012
    ---
    > Wed May 4 00:50:48 2011
    645c645
    < #unique......... 3037, #Total UniqueCount: 8037
    ---
    > #unique......... 3044, #Total UniqueCount: 8044
    659c659
    < #unique......... 3637, #Total UniqueCount: 11674
    ---
    > #unique......... 3637, #Total UniqueCount: 11681
    671,673c671,673
    < mean............ 9.975146e-01
    < variance........ 6.585727e-01
    < #unique......... 3537, #Total UniqueCount: 15211
    ---
    > mean............ 9.908482e-01
    > variance........ 6.618397e-01
    > #unique......... 3424, #Total UniqueCount: 15105
    676,677c676,677
    < mean............ -9.363936e-01
    < variance........ 1.468528e+01
    ---
    > mean............ -8.496201e-01
    > variance........ 1.499378e+01
    680,681c680,681
    < mean............ -8.485870e-01
    < variance........ 1.573330e+01
    ---
    > mean............ -9.517423e-01
    > variance........ 1.704030e+01
    685,687c685,687
    < mean............ 9.804646e-01
    < variance........ 6.692293e-01
    < #unique......... 3377, #Total UniqueCount: 18588
    ---
    > mean............ 9.876343e-01
    > variance........ 6.651307e-01
    > #unique......... 3644, #Total UniqueCount: 18749
    690,691c690,691
    < mean............ -8.931520e-01
    < variance........ 1.584134e+01
    ---
    > mean............ -9.384029e-01
    > variance........ 1.481110e+01
    694,695c694,695
    < mean............ -8.695397e-01
    < variance........ 1.673775e+01
    ---
    > mean............ -9.034500e-01
    > variance........ 1.643253e+01
    699,701c699,701
    < mean............ 1.000466e+00
    < variance........ 6.610175e-01
    < #unique......... 2788, #Total UniqueCount: 21376
    ---
    > mean............ 9.806229e-01
    > variance........ 6.682968e-01
    > #unique......... 3362, #Total UniqueCount: 22111
    704,705c704,705
    < mean............ -9.517187e-01
    < variance........ 1.342741e+01
    ---
    > mean............ -8.987182e-01
    > variance........ 1.459533e+01
    708,709c708,709
    < mean............ -9.679348e-01
    < variance........ 1.562253e+01
    ---
    > mean............ -8.906048e-01
    > variance........ 1.576451e+01
    713,715c713,715
    < mean............ 9.984302e-01
    < variance........ 6.616115e-01
    < #unique......... 2602, #Total UniqueCount: 23978
    ---
    > mean............ 9.919701e-01
    > variance........ 6.650665e-01
    > #unique......... 3036, #Total UniqueCount: 25147
    718,719c718,719
    < mean............ -9.667758e-01
    < variance........ 1.480870e+01
    ---
    > mean............ -8.717355e-01
    > variance........ 1.478299e+01
    722,723c722,723
    < mean............ -8.608610e-01
    < variance........ 1.435540e+01
    ---
    > mean............ -9.837840e-01
    > variance........ 1.514727e+01
    727,729c727,729
    < mean............ 9.832149e-01
    < variance........ 6.659886e-01
    < #unique......... 2676, #Total UniqueCount: 26654
    ---
    > mean............ 9.785551e-01
    > variance........ 6.679199e-01
    > #unique......... 3077, #Total UniqueCount: 28224
    732,733c732,733
    < mean............ -8.399847e-01
    < variance........ 1.425099e+01
    ---
    > mean............ -9.419792e-01
    > variance........ 1.386377e+01
    736,737c736,737
    < mean............ -9.599173e-01
    < variance........ 1.448148e+01
    ---
    > mean............ -1.039813e+00
    > variance........ 1.409147e+01
    741,743c741,743
    < mean............ 1.006897e+00
    < variance........ 6.591276e-01
    < #unique......... 2583, #Total UniqueCount: 29237
    ---
    > mean............ 9.839740e-01
    > variance........ 6.656382e-01
    > #unique......... 3060, #Total UniqueCount: 31284
    746,747c746,747
    < mean............ -8.664300e-01
    < variance........ 1.323069e+01
    ---
    > mean............ -8.969875e-01
    > variance........ 1.451103e+01
    750,751c750,751
    < mean............ -9.164463e-01
    < variance........ 1.398009e+01
    ---
    > mean............ -9.500069e-01
    > variance........ 1.386560e+01
    755,757c755,757
    < mean............ 1.012706e+00
    < variance........ 6.555265e-01
    < #unique......... 2520, #Total UniqueCount: 31757
    ---
    > mean............ 9.789811e-01
    > variance........ 6.679682e-01
    > #unique......... 3061, #Total UniqueCount: 34345
    760,761c760,761
    < mean............ -9.005868e-01
    < variance........ 1.176762e+01
    ---
    > mean............ -9.538414e-01
    > variance........ 1.433291e+01
    764,765c764,765
    < mean............ -9.545787e-01
    < variance........ 1.352363e+01
    ---
    > mean............ -9.436746e-01
    > variance........ 1.351829e+01
    769,771c769,771
    < mean............ 1.003790e+00
    < variance........ 6.575968e-01
    < #unique......... 2608, #Total UniqueCount: 34365
    ---
    > mean............ 9.875318e-01
    > variance........ 6.633945e-01
    > #unique......... 3040, #Total UniqueCount: 37385
    774,775c774,775
    < mean............ -8.943001e-01
    < variance........ 1.372665e+01
    ---
    > mean............ -9.461229e-01
    > variance........ 1.291516e+01
    778,779c778,779
    < mean............ -9.199017e-01
    < variance........ 1.275297e+01
    ---
    > mean............ -8.618071e-01
    > variance........ 1.353977e+01
    783,785c783,785
    < mean............ 9.729715e-01
    < variance........ 6.665570e-01
    < #unique......... 2753, #Total UniqueCount: 37118
    ---
    > mean............ 1.001984e+00
    > variance........ 6.571237e-01
    > #unique......... 3017, #Total UniqueCount: 40402
    788,789c788,789
    < mean............ -9.088842e-01
    < variance........ 1.356276e+01
    ---
    > mean............ -8.762315e-01
    > variance........ 1.233993e+01
    792,793c792,793
    < mean............ -8.351150e-01
    < variance........ 1.345370e+01
    ---
    > mean............ -9.260666e-01
    > variance........ 1.186558e+01
    797,799c797,799
    < mean............ 9.691748e-01
    < variance........ 6.659975e-01
    < #unique......... 2640, #Total UniqueCount: 39758
    ---
    > mean............ 9.897763e-01
    > variance........ 6.618311e-01
    > #unique......... 3042, #Total UniqueCount: 43444
    802,803c802,803
    < mean............ -9.653398e-01
    < variance........ 1.173838e+01
    ---
    > mean............ -9.666213e-01
    > variance........ 1.173213e+01
    806,807c806,807
    < mean............ -9.174944e-01
    < variance........ 1.304441e+01
    ---
    > mean............ -9.631840e-01
    > variance........ 1.168714e+01
    816,817c816,817
    < X[ 1] : -1.000000e+00 G[ 1] : 4.962760e-08
    < X[ 2] : -1.000000e+00 G[ 2] : -4.060125e-08
    ---
    > X[ 1] : -1.000000e+00 G[ 1] : 8.647865e-08
    > X[ 2] : -1.000000e+00 G[ 2] : -7.059874e-08
    822,823c822,823
    < Fri May 25 04:46:29 2012
    < Total run time : 0 hours 0 minutes and 14 seconds
    ---
    > Wed May 4 00:50:56 2011
    > Total run time : 0 hours 0 minutes and 8 seconds
    832c832
    < [1] 4.962760e-08 -4.060125e-08
    ---
    > [1] 8.647865e-08 -7.059874e-08
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [2s/2s] OK
  • checking re-building of vignette PDFs ... [5s/6s] OK
  • checking PDF version of manual ... OK
    NOTE: There were 3 notes.
    See
    ‘/home/hornik/tmp/R.check/r-release/Work/PKGS/rgenoud.Rcheck/00check.log’
    for details.