* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘rJava’ ...
** package ‘rJava’ successfully unpacked and MD5 sums checked
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
configure: checking whether gcc -std=gnu99 supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/bin/java'
archiver    : '/usr/bin/jar'
compiler    : '/usr/bin/javac'
header prep.: '/usr/bin/javah'
cpp flags   : '-I/usr/lib/jvm/java-7-openjdk-i386/jre/../include'
java libs   : '-L/usr/lib/jvm/java-7-openjdk-i386/jre/lib/i386/client -ljvm'
checking whether Java run-time works... yes
checking whether -Xrs is supported... yes
checking whether JNI programs can be compiled... yes
checking JNI data types... ok
checking whether JRI should be compiled (autodetect)... yes
checking whether debugging output should be enabled... no
checking whether memory profiling is desired... no
checking whether threads support is requested... no
checking whether callbacks support is requested... no
checking whether JNI cache support is requested... no
checking whether headless init is enabled... no
checking whether JRI is requested... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/zzz.R
config.status: creating src/config.h
=== configuring in jri (/tmp/Rtmp3yawcu/R.INSTALL74097724c260/rJava/jri)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  --cache-file=/dev/null --srcdir=.
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking whether Java interpreter works... checking whether JNI programs can be compiled... yes
checking whether JNI programs can be run... yes
checking JNI data types... ok
checking whether Rinterface.h exports R_CStackXXX variables... yes
checking whether Rinterface.h exports R_SignalHandlers... yes
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating Makefile
config.status: creating run
config.status: creating src/config.h
** libs
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Entering directory '/tmp/Rtmp3yawcu/R.INSTALL74097724c260/rJava/src'
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c Rglue.c -o Rglue.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c arrayc.c -o arrayc.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c callJNI.c -o callJNI.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c callback.c -o callback.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c fields.c -o fields.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c init.c -o init.o
init.c: In function ‘initJVM’:
init.c:135:38: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic]
     vm_options[propNum++].extraInfo  = vfprintf_hook;
                                      ^
init.c:139:38: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic]
     vm_options[propNum++].extraInfo  = exit_hook;
                                      ^
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c jri_glue.c -o jri_glue.o
jri_glue.c: In function ‘PushToREXP’:
jri_glue.c:24:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   jpar[1].j = (jlong) robj;
               ^
jri_glue.c: In function ‘RReleaseREXP’:
jri_glue.c:52:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  SEXP x = (SEXP) r;
           ^
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c loader.c -o loader.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c otables.c -o otables.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c rJava.c -o rJava.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/usr/local/include    -fpic  -g -O3 -Wall -Wno-unused -pedantic -mtune=native -c tools.c -o tools.o
gcc -std=gnu99 -shared -L/usr/local/lib -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -L/usr/lib/jvm/java-7-openjdk-i386/jre/lib/i386/client -ljvm -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
(cd ../jri && make)
make[2]: Entering directory '/tmp/Rtmp3yawcu/R.INSTALL74097724c260/rJava/jri'
make -C src JRI.jar
make[3]: Entering directory '/tmp/Rtmp3yawcu/R.INSTALL74097724c260/rJava/jri/src'
/usr/bin/javac -target 1.4 -source 1.4 -d . ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../Mutex.java ../package-info.java ../RMainLoopCallbacks.java ../RVector.java ../RBool.java ../Rengine.java
warning: [options] bootstrap class path not set in conjunction with -source 1.4
1 warning
/usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine
gcc -std=gnu99 -c -o Rengine.o Rengine.c -g -Iinclude  -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -Wall -Wno-unused -pedantic -mtune=native  -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include  -fpic -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include
In file included from Rengine.c:4:0:
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniParse’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:121:14: note: in expansion of macro ‘SEXP2L’
       return SEXP2L(pstr);
              ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniEval’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:135:36: note: in expansion of macro ‘L2SEXP’
       SEXP es = R_NilValue, exps = L2SEXP(exp);
                                    ^
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:136:23: note: in expansion of macro ‘L2SEXP’
       SEXP eval_env = L2SEXP(rho);
                       ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:159:14: note: in expansion of macro ‘SEXP2L’
       return SEXP2L(es);
              ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniAssign’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:179:20: note: in expansion of macro ‘L2SEXP’
     s.rho = rhoL ? L2SEXP(rhoL) : R_GlobalEnv;
                    ^
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:180:20: note: in expansion of macro ‘L2SEXP’
     s.val = valL ? L2SEXP(valL) : R_NilValue;
                    ^
In file included from jri.h:6:0,
                 from Rengine.c:4:
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniProtect’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:632:31: note: in definition of macro ‘PROTECT’
 #define PROTECT(s) Rf_protect(s)
                               ^
Rengine.c:189:10: note: in expansion of macro ‘L2SEXP’
  PROTECT(L2SEXP(exp));
          ^
In file included from Rengine.c:4:0:
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniRelease’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:201:27: note: in expansion of macro ‘L2SEXP’
  if (exp) R_ReleaseObject(L2SEXP(exp));
                           ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPreserve’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:207:28: note: in expansion of macro ‘L2SEXP’
  if (exp) R_PreserveObject(L2SEXP(exp));
                            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPrintValue’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:213:22: note: in expansion of macro ‘L2SEXP’
  Rf_PrintValue(exp ? L2SEXP(exp) : R_NilValue);
                      ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniParentEnv’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
jri.h:21:28: note: in definition of macro ‘SEXP2L’
 #define SEXP2L(s) ((jlong)(s))
                            ^
Rengine.c:219:30: note: in expansion of macro ‘L2SEXP’
   return SEXP2L(ENCLOS(exp ? L2SEXP(exp) : R_GlobalEnv));
                              ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:219:10: note: in expansion of macro ‘SEXP2L’
   return SEXP2L(ENCLOS(exp ? L2SEXP(exp) : R_GlobalEnv));
          ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniFindVar’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
jri.h:21:28: note: in definition of macro ‘SEXP2L’
 #define SEXP2L(s) ((jlong)(s))
                            ^
Rengine.c:228:38: note: in expansion of macro ‘L2SEXP’
  return SEXP2L(Rf_findVar(sym, rho ? L2SEXP(rho) : R_GlobalEnv));
                                      ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:228:9: note: in expansion of macro ‘SEXP2L’
  return SEXP2L(Rf_findVar(sym, rho ? L2SEXP(rho) : R_GlobalEnv));
         ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniListEnv’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
jri.h:21:28: note: in definition of macro ‘SEXP2L’
 #define SEXP2L(s) ((jlong)(s))
                            ^
Rengine.c:234:35: note: in expansion of macro ‘L2SEXP’
  return SEXP2L(R_lsInternal(rho ? L2SEXP(rho) : R_GlobalEnv, all));
                                   ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:234:9: note: in expansion of macro ‘SEXP2L’
  return SEXP2L(R_lsInternal(rho ? L2SEXP(rho) : R_GlobalEnv, all));
         ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniSpecialObject’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:241:18: note: in expansion of macro ‘SEXP2L’
   case 0: return SEXP2L(R_NilValue);
                  ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:242:18: note: in expansion of macro ‘SEXP2L’
   case 1: return SEXP2L(R_GlobalEnv);
                  ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:243:18: note: in expansion of macro ‘SEXP2L’
   case 2: return SEXP2L(R_EmptyEnv);
                  ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:244:18: note: in expansion of macro ‘SEXP2L’
   case 3: return SEXP2L(R_BaseEnv);
                  ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:245:18: note: in expansion of macro ‘SEXP2L’
   case 4: return SEXP2L(R_UnboundValue);
                  ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:246:18: note: in expansion of macro ‘SEXP2L’
   case 5: return SEXP2L(R_MissingArg);
                  ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:247:18: note: in expansion of macro ‘SEXP2L’
   case 6: return SEXP2L(R_NaString);
                  ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:248:18: note: in expansion of macro ‘SEXP2L’
   case 7: return SEXP2L(R_BlankString);
                  ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniXrefToJava’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:256:12: note: in expansion of macro ‘L2SEXP’
  SEXP xp = L2SEXP(exp);
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniJavaToXref’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:266:10: note: in expansion of macro ‘SEXP2L’
   return SEXP2L(R_MakeExternalPtr(go, R_NilValue, R_NilValue));
          ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetString’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:272:33: note: in expansion of macro ‘L2SEXP’
       return jri_putString(env, L2SEXP(exp), 0);
                                 ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetStringArray’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:279:38: note: in expansion of macro ‘L2SEXP’
       return jri_putStringArray(env, L2SEXP(exp));
                                      ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetIntArray’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:285:35: note: in expansion of macro ‘L2SEXP’
       return jri_putIntArray(env, L2SEXP(exp));
                                   ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetRawArray’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:291:36: note: in expansion of macro ‘L2SEXP’
       return jri_putByteArray(env, L2SEXP(exp));
                                    ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetBoolArrayI’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:297:37: note: in expansion of macro ‘L2SEXP’
       return jri_putBoolArrayI(env, L2SEXP(exp));
                                     ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetDoubleArray’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:303:38: note: in expansion of macro ‘L2SEXP’
       return jri_putDoubleArray(env, L2SEXP(exp));
                                      ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetVector’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:309:35: note: in expansion of macro ‘L2SEXP’
     return jri_putSEXPLArray(env, L2SEXP(exp));
                                   ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniExpType’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:315:25: note: in expansion of macro ‘L2SEXP’
     return exp ? TYPEOF(L2SEXP(exp)) : 0;
                         ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutString’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:335:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(jri_getString(env, s));
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutStringArray’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:341:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(jri_getStringArray(env, a));
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutIntArray’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:347:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(jri_getIntArray(env, a));
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutRawArray’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:353:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(jri_getByteArray(env, a));
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutBoolArrayI’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:359:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(jri_getBoolArrayI(env, a));
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutBoolArray’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:365:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(jri_getBoolArray(env, a));
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutDoubleArray’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:371:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(jri_getDoubleArray(env, a));
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutVector’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:377:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(jri_getSEXPLArray(env, a));
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetAttr’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:384:44: note: in expansion of macro ‘L2SEXP’
     if (!an || an==R_NilValue || exp==0 || L2SEXP(exp)==R_NilValue) return 0;
                                            ^
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:386:28: note: in expansion of macro ‘L2SEXP’
         SEXP a = getAttrib(L2SEXP(exp), an);
                            ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:387:34: note: in expansion of macro ‘SEXP2L’
         return (a==R_NilValue)?0:SEXP2L(a);
                                  ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetAttrNames’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:394:14: note: in expansion of macro ‘L2SEXP’
     SEXP o = L2SEXP(exp);
              ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniSetAttr’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:426:44: note: in expansion of macro ‘L2SEXP’
     if (!an || an==R_NilValue || exp==0 || L2SEXP(exp)==R_NilValue) return;
                                            ^
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:428:15: note: in expansion of macro ‘L2SEXP’
     setAttrib(L2SEXP(exp), an, (attr==0)?R_NilValue:L2SEXP(attr));
               ^
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:428:53: note: in expansion of macro ‘L2SEXP’
     setAttrib(L2SEXP(exp), an, (attr==0)?R_NilValue:L2SEXP(attr));
                                                     ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniInstallSymbol’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:441:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(jri_installString(env, s));
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetSymbolName’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:447:32: note: in expansion of macro ‘L2SEXP’
  return jri_putSymbolName(env, L2SEXP(exp));
                                ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniInherits’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:457:16: note: in expansion of macro ‘L2SEXP’
   if (inherits(L2SEXP(exp), (char*)c)) res = 1;
                ^
In file included from jri.h:6:0,
                 from Rengine.c:4:
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniCons’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:543:28: note: in definition of macro ‘LCONS’
 #define LCONS(a, b) lcons((a), (b))  /* language lists */
                            ^
Rengine.c:468:36: note: in expansion of macro ‘L2SEXP’
     l = LCONS((head==0)?R_NilValue:L2SEXP(head), (tail==0)?R_NilValue:L2SEXP(tail));
                                    ^
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:543:33: note: in definition of macro ‘LCONS’
 #define LCONS(a, b) lcons((a), (b))  /* language lists */
                                 ^
Rengine.c:468:71: note: in expansion of macro ‘L2SEXP’
     l = LCONS((head==0)?R_NilValue:L2SEXP(head), (tail==0)?R_NilValue:L2SEXP(tail));
                                                                       ^
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:542:26: note: in definition of macro ‘CONS’
 #define CONS(a, b) cons((a), (b))  /* data lists */
                          ^
Rengine.c:470:35: note: in expansion of macro ‘L2SEXP’
     l = CONS((head==0)?R_NilValue:L2SEXP(head), (tail==0)?R_NilValue:L2SEXP(tail));
                                   ^
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:542:31: note: in definition of macro ‘CONS’
 #define CONS(a, b) cons((a), (b))  /* data lists */
                               ^
Rengine.c:470:70: note: in expansion of macro ‘L2SEXP’
     l = CONS((head==0)?R_NilValue:L2SEXP(head), (tail==0)?R_NilValue:L2SEXP(tail));
                                                                      ^
In file included from Rengine.c:4:0:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:472:23: note: in expansion of macro ‘L2SEXP’
   if (tag) SET_TAG(l, L2SEXP(tag));
                       ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:473:10: note: in expansion of macro ‘SEXP2L’
   return SEXP2L(l);
          ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniCAR’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:480:22: note: in expansion of macro ‘L2SEXP’
         SEXP r = CAR(L2SEXP(exp));
                      ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:481:34: note: in expansion of macro ‘SEXP2L’
         return (r==R_NilValue)?0:SEXP2L(r);
                                  ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniCDR’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:490:22: note: in expansion of macro ‘L2SEXP’
         SEXP r = CDR(L2SEXP(exp));
                      ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:491:34: note: in expansion of macro ‘SEXP2L’
         return (r==R_NilValue)?0:SEXP2L(r);
                                  ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniTAG’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:500:22: note: in expansion of macro ‘L2SEXP’
         SEXP r = TAG(L2SEXP(exp));
                      ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:501:34: note: in expansion of macro ‘SEXP2L’
         return (r==R_NilValue)?0:SEXP2L(r);
                                  ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniPutList’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:516:21: note: in expansion of macro ‘SEXP2L’
     if (l<1) return SEXP2L(CONS(R_NilValue, R_NilValue));
                     ^
In file included from jri.h:6:0,
                 from Rengine.c:4:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:542:26: note: in definition of macro ‘CONS’
 #define CONS(a, b) cons((a), (b))  /* data lists */
                          ^
Rengine.c:521:38: note: in expansion of macro ‘L2SEXP’
         t=CONS((ap[i]==0)?R_NilValue:L2SEXP(ap[i]), t);
                                      ^
In file included from Rengine.c:4:0:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:526:12: note: in expansion of macro ‘SEXP2L’
     return SEXP2L(t);
            ^
Rengine.c: In function ‘Java_org_rosuda_JRI_Rengine_rniGetList’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
Rengine.c:533:12: note: in expansion of macro ‘L2SEXP’
     SEXP e=L2SEXP(exp);
            ^
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
Rengine.c:560:51: note: in expansion of macro ‘SEXP2L’
                     dae[i]=(CAR(t)==R_NilValue)?0:SEXP2L(CAR(t));
                                                   ^
gcc -std=gnu99 -c -o jri.o jri.c -g -Iinclude  -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -Wall -Wno-unused -pedantic -mtune=native  -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include  -fpic -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include
In file included from jri.c:3:0:
jri.c: In function ‘jri_putSEXPLArray’:
jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 #define SEXP2L(s) ((jlong)(s))
                    ^
jri.c:193:26: note: in expansion of macro ‘SEXP2L’
                 dae[i] = SEXP2L(VECTOR_ELT(e, i));
                          ^
jri.c: In function ‘jri_getObjectArray’:
jri.c:308:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     INTEGER(ar)[i] = (int)(jlong)(*env)->GetObjectArrayElement(env, o, i);
                           ^
In file included from jri.c:3:0:
jri.c: In function ‘jri_getSEXPLArray’:
jri.h:25:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 #define L2SEXP(s) ((SEXP)((jlong)((unsigned long)(s))))
                    ^
jri.c:472:31: note: in expansion of macro ‘L2SEXP’
         SET_VECTOR_ELT(ar, i, L2SEXP(ap[i]));
                               ^
gcc -std=gnu99 -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude  -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -Wall -Wno-unused -pedantic -mtune=native  -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include  -fpic -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include
gcc -std=gnu99 -c -o Rinit.o Rinit.c -g -Iinclude  -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -Wall -Wno-unused -pedantic -mtune=native  -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include  -fpic -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include
gcc -std=gnu99 -c -o globals.o globals.c -g -Iinclude  -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -Wall -Wno-unused -pedantic -mtune=native  -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include  -fpic -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include
gcc -std=gnu99 -c -o rjava.o rjava.c -g -Iinclude  -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -Wall -Wno-unused -pedantic -mtune=native  -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include  -fpic -I/usr/lib/jvm/java-7-openjdk-i386/jre/../include
gcc -std=gnu99 -o libjri.so Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o  -shared -L/usr/lib/jvm/java-7-openjdk-i386/jre/lib/i386/client -ljvm -Wl,--export-dynamic -fopenmp  -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR -llzma -lrt -ldl -lm -licuuc -licui18n
/usr/bin/javac -target 1.4 -source 1.4 -d . ../package-info.java ../RFactor.java ../REXP.java ../RList.java ../Mutex.java ../RVector.java ../RBool.java ../RConsoleOutputStream.java ../Rengine.java ../RMainLoopCallbacks.java
warning: [options] bootstrap class path not set in conjunction with -source 1.4
1 warning
/usr/bin/jar fc JRI.jar org libjri.so
make[3]: Leaving directory '/tmp/Rtmp3yawcu/R.INSTALL74097724c260/rJava/jri/src'
rm -f libjri.so
cp src/libjri.so libjri.so
/usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java
warning: [options] bootstrap class path not set in conjunction with -source 1.4
Note: examples/rtest.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
1 warning
/usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java
warning: [options] bootstrap class path not set in conjunction with -source 1.4
Note: examples/rtest2.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
1 warning
make[2]: Leaving directory '/tmp/Rtmp3yawcu/R.INSTALL74097724c260/rJava/jri'
make[1]: Leaving directory '/tmp/Rtmp3yawcu/R.INSTALL74097724c260/rJava/src'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Entering directory '/tmp/Rtmp3yawcu/R.INSTALL74097724c260/rJava/src'
make[1]: Leaving directory '/tmp/Rtmp3yawcu/R.INSTALL74097724c260/rJava/src'
installing via 'install.libs.R' to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/rJava
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (rJava)