Check results for 'prabclus'

using R version 3.0.1 (2013-05-16)
using platform: i686-pc-linux-gnu (32-bit)
using session charset: UTF-8
checking for file ‘prabclus/DESCRIPTION’ ... OK
this is package ‘prabclus’ version ‘2.2-4’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘prabclus’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking examples ... [13s/13s] OK
checking differences from ‘prabclus-Ex.Rout’ to ‘prabclus-Ex.Rout.save’ ...
2c2
< Package 'mclust' version 4.1
---
> Package 'mclust' version 4.0
4c4
< > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
---
> > assign(".oldSearch", search(), pos = 'CheckExEnv')
910,912c910,912
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---
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---
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< [4,] 0 0 0 0 0 1 0 0 0 0 0 0
---
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---
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---
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< [9,] 0.2400000 0.0800000 0.28 0.16
---
> [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12]
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> [,25] [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33]
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> [7,] 0.00 0.00 0.0 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00
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> [9,] 0.32 0.20 0.4 0.2400000 0.4000000 0.2000000 0.2400000 0.0800000 0.28
> [,34]
> [1,] 0.00
> [2,] 0.00
> [3,] 0.00
> [4,] 0.00
> [5,] 0.00
> [6,] 0.00
> [7,] 0.00
> [8,] 0.00
> [9,] 0.16
5276,5284c5266,5273
< [1] 0.38461538 0.15384615 0.38461538 0.53846154 0.69230769 0.07692308
< [7] 0.15384615 0.07692308 0.00000000 0.07692308 0.07692308 0.38461538
< [13] 0.84615385 0.23076923 0.38461538 0.53846154 0.07692308 0.23076923
< [19] 0.15384615 0.15384615 0.00000000 0.23076923 0.15384615 0.76923077
< [25] 0.00000000 0.23076923 0.00000000 0.15384615 0.07692308 0.15384615
< [31] 0.38461538 0.00000000 0.07692308 0.15384615 0.07692308 0.23076923
< [37] 0.07692308 0.53846154 0.38461538 0.38461538 0.38461538 0.00000000
< [43] 0.07692308 0.00000000 0.15384615 0.07692308 0.07692308 0.00000000
< [49] 0.00000000 0.07692308
---
> [1] 0.4736842 0.3684211 0.4736842 0.5263158 0.3684211 0.4210526 0.3684211
> [8] 0.5263158 0.5263158 0.5263158 0.6842105 0.4210526 0.4210526 0.5263158
> [15] 0.4210526 0.2631579 0.4210526 0.4736842 0.5263158 0.4210526 0.4736842
> [22] 0.4210526 0.5263158 0.4210526 0.6315789 0.5263158 0.4210526 0.4736842
> [29] 0.4210526 0.3684211 0.5263158 0.4736842 0.4736842 0.4210526 0.4736842
> [36] 0.5789474 0.5263158 0.5263158 0.4210526 0.3684211 0.2631579 0.4210526
> [43] 0.3684211 0.4736842 0.5263158 0.4210526 0.4210526 0.2631579 0.5263158
> [50] 0.5263158
5287c5276
< [1] 0.0000000 0.0000000 0.2307692 0.0000000
---
> [1] 0.2631579 0.3684211 0.2631579 0.4210526
5290c5279
< [1] 0.3846154 0.3846154 0.8461538 0.2307692
---
> [1] 0.5263158 0.5263158 0.5789474 0.6842105
5293c5282
< [1] 0.13461538 0.09502262 0.48520710 0.12820513
---
> [1] 0.3947368 0.4520124 0.4574899 0.5043860
5795,5797c5784,5786
< [1] 0 1 0 3 3 7 6 0 8 0 3 0 0 4 1 6 6 7 0 0 0 7 4 1 4 0 6 5 2 1 2 5 0 6 1 0 0 1
< [39] 0 7 1 3 2 2 5 0 1 2 3 1 8 0 0 4 5 2 8 4 0 0 4 1 5 8 0 2 3 0 0 2 0 1 8 4 0 7
< [77] 3 5 0 6
---
> [1] 0 1 0 2 2 8 6 0 7 0 2 0 0 4 1 6 6 8 4 0 0 0 4 1 4 0 6 5 3 1 3 5 0 6 1 0 0 1
> [39] 0 8 1 2 3 3 5 0 1 3 2 1 7 0 0 4 5 3 7 4 0 0 4 1 5 7 0 3 2 0 2 3 0 1 7 4 0 0
> [77] 2 5 0 6
5800,5804c5789,5793
< [1] "N" "1" "N" "3" "3" "7" "6" "N" "8" "N" "3" "N" "N" "4" "1" "6" "6" "7" "N"
< [20] "N" "N" "7" "4" "1" "4" "N" "6" "5" "2" "1" "2" "5" "N" "6" "1" "N" "N" "1"
< [39] "N" "7" "1" "3" "2" "2" "5" "N" "1" "2" "3" "1" "8" "N" "N" "4" "5" "2" "8"
< [58] "4" "N" "N" "4" "1" "5" "8" "N" "2" "3" "N" "N" "2" "N" "1" "8" "4" "N" "7"
< [77] "3" "5" "N" "6"
---
> [1] "N" "1" "N" "2" "2" "8" "6" "N" "7" "N" "2" "N" "N" "4" "1" "6" "6" "8" "4"
> [20] "N" "N" "N" "4" "1" "4" "N" "6" "5" "3" "1" "3" "5" "N" "6" "1" "N" "N" "1"
> [39] "N" "8" "1" "2" "3" "3" "5" "N" "1" "3" "2" "1" "7" "N" "N" "4" "5" "3" "7"
> [58] "4" "N" "N" "4" "1" "5" "7" "N" "3" "2" "N" "2" "3" "N" "1" "7" "4" "N" "N"
> [77] "2" "5" "N" "6"
OK
checking for unstated dependencies in tests ... OK
checking tests ... [17s/17s] OK
Running ‘prabclustests.R’ [17s/17s]
Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ...4c4
< Package 'mclust' version 4.1
---
> Package 'mclust' version 4.0
104c104
< The following object is masked from 'package:boot':
---
> The following object(s) are masked from 'package:boot':
107a108,114
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
112c119,128
< deldir 0.0-22
---
> deldir 0.0-19
>
> PLEASE NOTE: The components "delsgs" and "summary" of the
> object returned by deldir() are now DATA FRAMES rather than
> matrices (as they were prior to release 0.0-18).
> See help("deldir").
>
> PLEASE NOTE: The process for determining duplicated points
> has changed from that used in version 0.0-9 (and previously).
>
243c259
< 0.518551272 0.171977682 -0.377328462 2.458473326 2.463184282 2.314771765
---
> 0.518551273 0.171977682 -0.377328462 2.458473326 2.463184282 2.314771765
247c263
< -1.216447188 0.825553654 0.002517122 -2.021304883 -0.640741400 2.642987069
---
> -1.216447189 0.825553654 0.002517123 -2.021304883 -0.640741400 2.642987069
249c265
< 4.344615516 3.379415755 2.724380512 2.671291344 2.730335781 1.568249328
---
> 4.344615515 3.379415755 2.724380512 2.671291343 2.730335781 1.568249328
251c267
< 1.883324110 2.941002067 1.748812985 2.959448137 2.596541900 2.788328342
---
> 1.883324109 2.941002067 1.748812984 2.959448137 2.596541899 2.788328341
253c269
< 1.039322444 0.996048970 1.413677094 1.979577407 -1.856066333 1.620710137
---
> 1.039322444 0.996048970 1.413677094 1.979577407 -1.856066332 1.620710137
255c271
< 1.742346239 2.279283853 2.057336649 2.325874389 1.085689069 3.373029733
---
> 1.742346239 2.279283853 2.057336649 2.325874388 1.085689070 3.373029733
257c273
< 3.270055851 2.760964299 2.644284324 -0.102708365 1.985734464 2.321893701
---
> 3.270055851 2.760964299 2.644284323 -0.102708365 1.985734464 2.321893701
261c277
< -0.635752465 -0.433019911 -1.328899646 -2.276661196 -2.350079254 -1.702264144
---
> -0.635752465 -0.433019911 -1.328899645 -2.276661196 -2.350079254 -1.702264144
263c279
< 1.336479313 1.993097716 1.377071781 0.712727288 2.143142883 -1.615460295
---
> 1.336479313 1.993097716 1.377071781 0.712727287 2.143142882 -1.615460294
265c281
< -0.922313114 -1.615460295 0.463981247 -1.615460295 1.023597035 -0.516848006
---
> -0.922313114 -1.615460294 0.463981247 -1.615460294 1.023597035 -0.516848006
275c291
< -0.192569439 -0.392609289 1.543340357 -0.587157322 0.313982670 3.488061630
---
> -0.192569439 -0.392609289 1.543340357 -0.587157322 0.313982669 3.488061630
277c293
< 1.397058364 0.480641274 3.234134823 -0.485931804 1.835887698 0.207247388
---
> 1.397058364 0.480641274 3.234134823 -0.485931804 1.835887697 0.207247388
279c295
< -0.782166262 1.057505224 1.931410860 2.214758270 -0.597296223 0.095850958
---
> -0.782166262 1.057505223 1.931410860 2.214758270 -0.597296223 0.095850958
283c299
< -0.185459031 -0.841552225 0.526558314 -0.663214753 -0.494978635 -1.467933709
---
> -0.185459030 -0.841552225 0.526558314 -0.663214753 -0.494978635 -1.467933709
287c303
< -1.239958907 -1.239958907 0.774944113 1.285769737 -0.323668175 -1.239958907
---
> -1.239958907 -1.239958907 0.774944114 1.285769738 -0.323668175 -1.239958907
291c307
< -0.07837496
---
> -0.07837495
308c324
< -0.078374956 1.098612289 -0.056273292 0.516848006 0.681660531 0.597296223
---
> -0.078374955 1.098612289 -0.056273292 0.516848006 0.681660531 0.597296223
312c328
< 0.518551272 0.171977682 -0.377328462 2.458473326 2.463184282 2.314771765
---
> 0.518551273 0.171977682 -0.377328462 2.458473326 2.463184282 2.314771765
316c332
< -1.216447188 0.825553654 0.002517122 -2.021304883 -0.640741400 2.642987069
---
> -1.216447189 0.825553654 0.002517123 -2.021304883 -0.640741400 2.642987069
318c334
< 4.344615516 3.379415755 2.724380512 2.671291344 2.730335781 1.568249328
---
> 4.344615515 3.379415755 2.724380512 2.671291343 2.730335781 1.568249328
320c336
< 1.883324110 2.941002067 1.748812985 2.959448137 2.596541900 2.788328342
---
> 1.883324109 2.941002067 1.748812984 2.959448137 2.596541899 2.788328341
322c338
< 1.039322444 0.996048970 1.413677094 1.979577407 -1.856066333 1.620710137
---
> 1.039322444 0.996048970 1.413677094 1.979577407 -1.856066332 1.620710137
324c340
< 1.742346239 2.279283853 2.057336649 2.325874389 1.085689069 3.373029733
---
> 1.742346239 2.279283853 2.057336649 2.325874388 1.085689070 3.373029733
326c342
< 3.270055851 2.760964299 2.644284324 -0.102708365 1.985734464 2.321893701
---
> 3.270055851 2.760964299 2.644284323 -0.102708365 1.985734464 2.321893701
330c346
< -0.635752465 -0.433019911 -1.328899646 -2.276661196 -2.350079254 -1.702264144
---
> -0.635752465 -0.433019911 -1.328899645 -2.276661196 -2.350079254 -1.702264144
332c348
< 1.336479313 1.993097716 1.377071781 0.712727288 2.143142883 -1.615460295
---
> 1.336479313 1.993097716 1.377071781 0.712727287 2.143142882 -1.615460294
334c350
< -0.922313114 -1.615460295 0.463981247 -1.615460295 1.023597035 -0.516848006
---
> -0.922313114 -1.615460294 0.463981247 -1.615460294 1.023597035 -0.516848006
344c360
< -0.192569439 -0.392609289 1.543340357 -0.587157322 0.313982670 3.488061630
---
> -0.192569439 -0.392609289 1.543340357 -0.587157322 0.313982669 3.488061630
346c362
< 1.397058364 0.480641274 3.234134823 -0.485931804 1.835887698 0.207247388
---
> 1.397058364 0.480641274 3.234134823 -0.485931804 1.835887697 0.207247388
348c364
< -0.782166262 1.057505224 1.931410860 2.214758270 -0.597296223 0.095850958
---
> -0.782166262 1.057505223 1.931410860 2.214758270 -0.597296223 0.095850958
352c368
< -0.185459031 -0.841552225 0.526558314 -0.663214753 -0.494978635 -1.467933709
---
> -0.185459030 -0.841552225 0.526558314 -0.663214753 -0.494978635 -1.467933709
356c372
< -1.239958907 -1.239958907 0.774944113 1.285769737 -0.323668175 -1.239958907
---
> -1.239958907 -1.239958907 0.774944114 1.285769738 -0.323668175 -1.239958907
381c397
< [6,] 0.00000 0.00000 0.0000000 0.000000 102.8374630 0.000000 0.00000000
---
> [6,] 0.00000 0.00000 0.0000000 0.000000 102.8374628 0.000000 0.00000000
385c401
< [3,] 4.1498599 96.42656 5493.44382 231.69684 509.11685 25.84498 210.332487
---
> [3,] 4.1498599 96.42656 5493.44380 231.69684 509.11685 25.84498 210.332487
391c407
< [2,] 20.060187 54.326617 120.736258 6.295851 106.81992 70.27833 33.65442
---
> [2,] 20.060187 54.326617 120.736257 6.295851 106.81992 70.27833 33.65442
404c420
< [1,] 18.70914 62.44125 26.09089 53.259917 200.76447 33.76064 67.50165
---
> [1,] 18.70914 62.44125 26.09089 53.259916 200.76447 33.76064 67.50165
412c428
< [2,] 61.94124 5.7294661 83.281961 7.448796 0.000000 0.00000 0.000000
---
> [2,] 61.94124 5.7294661 83.281960 7.448796 0.000000 0.00000 0.000000
416c432
< [6,] 135.65793 3.7025587 57.094803 113.240373 1.764743 0.00000 0.000000
---
> [6,] 135.65793 3.7025586 57.094803 113.240373 1.764743 0.00000 0.000000
465c481
< [6,] 0.000000 0.000000 0.000000 79.71264 0.000000 0.000000 523.8909
---
> [6,] 0.000000 0.000000 0.000000 79.71263 0.000000 0.000000 523.8909
468c484
< [2,] 7.808274 0.000000 0.00000 2.1144072 0.00000 0.000000 0.000000
---
> [2,] 7.808273 0.000000 0.00000 2.1144072 0.00000 0.000000 0.000000
checking PDF version of manual ... OK