• using R version 2.15.0 (2012-03-30)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘pcurve/DESCRIPTION’ ... OK
• this is package ‘pcurve’ version ‘0.6-3’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for executable files ... OK
• checking whether package ‘pcurve’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘pcurve/R/zzz.R’:
  .First.lib calls:
  library(stats)
  library(MASS)
  
  Package startup functions should not change the search path.
  See section ‘Good practice’ in ?.onAttach.
  
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... ERROR
  Running examples in ‘pcurve-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: pcurve
  > ### Title: Principal Curve Analysis
  > ### Aliases: pcurve
  > ### Keywords: multivariate smooth loess hplot
  >
  > ### ** Examples
  >
  > #a simulated dataset with 4 response variables (taxa 1-4),
  > #n=100. The response curve is Gaussian and noise is Poisson.
  > data(sim4var)
  > sim4fit <- pcurve(sim4var, plot.init = FALSE, use.loc = TRUE)
  
  Estimating starting configuration using : CA
  
  You have specified use.loc = TRUE:
  To progress to next plot,
  left-mouse-click on current plot...
  GCV DFs : Penalty = 1
  PC B-spline fit DF = 6.86
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Iter 1 --- % dist^2 expl : 90.46 Length : 385.69
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Warning in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  specified both 'df' and 'cv'; will disregard the latter
  Iter 2 --- % dist^2 expl : 92.52 Length : NaN
  Error in smooth.spline(pcurve$lambda, x[, j], control.spar = list(low = 0), :
  missing or infinite values in inputs are not allowed
  Calls: pcurve -> smooth.spline
  Execution halted