• using R version 2.15.0 (2012-03-30)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘pcalg/DESCRIPTION’ ... OK
• this is package ‘pcalg’ version ‘1.1-5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘pcalg’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [31s/31s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [96s/97s] OK
  Running ‘test_amat2dag.R’ [1s/1s]
  Running ‘test_compareGraphs.R’ [1s/1s]
  Running ‘test_dag2cpdag.R’ [1s/1s]
  Running ‘test_dsep.R’ [1s/1s]
  Running ‘test_fci.R’ [16s/16s]
  Running ‘test_gSquareBin.R’ [2s/2s]
  Running ‘test_gSquareDis.R’ [2s/2s]
  Running ‘test_getNextSet.R’ [1s/1s]
  Running ‘test_ida.R’ [6s/6s]
  Running ‘test_idaFast.R’ [5s/5s]
  Running ‘test_pc.R’ [6s/6s]
  Running ‘test_pcAlgo.R’ [5s/5s]
  Running ‘test_pcSelect.R’ [1s/1s]
  Running ‘test_pcorOrder.R’ [1s/1s]
  Running ‘test_pdag2dag.R’ [1s/1s]
  Running ‘test_randomDAG.R’ [1s/1s]
  Running ‘test_rfci.R’ [28s/28s]
  Running ‘test_rmvDAG.R’ [1s/1s]
  Running ‘test_shd.R’ [1s/1s]
  Running ‘test_skeleton.R’ [3s/3s]
  Running ‘test_udag2pag.R’ [2s/2s]
  Running ‘test_udag2pdag.R’ [8s/8s]
  Running ‘test_wgtMatrix.R’ [1s/1s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [4s/4s] OK
• checking re-building of vignette PDFs ... [7s/8s] OK
• checking PDF version of manual ... OK