- using R version 2.15.0 (2012-03-30)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘mlmRev/DESCRIPTION’ ... OK
- this is package ‘mlmRev’ version ‘1.0-1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘mlmRev’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
‘myVignette.sty’
Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
- checking examples ... [11s/11s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [42s/43s] OK
Running ‘guImmun.R’ [28s/28s]
Comparing ‘guImmun.Rout’ to ‘guImmun.Rout.save’ ...5,10d4
< Attaching package: 'lme4'
<
< The following object(s) are masked from 'package:stats':
<
< AIC, BIC
<
32c26
< mom25pY -0.1284 0.1543 -0.83 0.4054
---
> mom25pY -0.1284 0.1543 -0.83 0.4055
36c30
< ethnN -0.1132 0.3125 -0.36 0.7173
---
> ethnN -0.1131 0.3125 -0.36 0.7173
39c33
< momEdS 0.3016 0.3119 0.97 0.3334
---
> momEdS 0.3016 0.3119 0.97 0.3335
45c39
< pcInd81 -0.8574 0.3257 -2.63 0.0085 **
---
> pcInd81 -0.8572 0.3257 -2.63 0.0085 **
87,92c81,86
< mom25pY -0.1360 0.1537 -0.88 0.37645
< ord23 -0.1374 0.1605 -0.86 0.39168
< ord46 0.1556 0.1977 0.79 0.43142
< ord7p 0.2404 0.2464 0.98 0.32909
< ethnN -0.2206 0.3095 -0.71 0.47605
< ethnS -0.0784 0.2311 -0.34 0.73443
---
> mom25pY -0.1359 0.1537 -0.88 0.37652
> ord23 -0.1375 0.1605 -0.86 0.39166
> ord46 0.1556 0.1977 0.79 0.43148
> ord7p 0.2404 0.2464 0.98 0.32913
> ethnN -0.2206 0.3095 -0.71 0.47600
> ethnS -0.0784 0.2311 -0.34 0.73438
94,95c88,89
< momEdS 0.3876 0.2766 1.40 0.16113
< momWorkY 0.2721 0.1283 2.12 0.03389 *
---
> momEdS 0.3876 0.2766 1.40 0.16115
> momWorkY 0.2721 0.1283 2.12 0.03390 *
97c91
< pcInd81 -0.8354 0.3251 -2.57 0.01017 *
---
> pcInd81 -0.8354 0.3251 -2.57 0.01018 *
111c105
< mom (Intercept) 1.2410 1.1140
---
> mom (Intercept) 1.2411 1.1140
117c111
< (Intercept) -0.6971 0.2687 -2.59 0.00948 **
---
> (Intercept) -0.6971 0.2687 -2.59 0.00947 **
119,121c113,115
< mom25pY 0.0258 0.1163 0.22 0.82417
< ethnN -0.2172 0.3068 -0.71 0.47894
< ethnS -0.0812 0.2293 -0.35 0.72324
---
> mom25pY 0.0258 0.1163 0.22 0.82405
> ethnN -0.2172 0.3068 -0.71 0.47896
> ethnS -0.0812 0.2294 -0.35 0.72324
123c117
< momEdS 0.3266 0.2708 1.21 0.22783
---
> momEdS 0.3266 0.2708 1.21 0.22778
126c120
< pcInd81 -0.8367 0.3220 -2.60 0.00937 **
---
> pcInd81 -0.8366 0.3220 -2.60 0.00938 **
Running ‘lmerTest.R’ [12s/12s]
Comparing ‘lmerTest.Rout’ to ‘lmerTest.Rout.save’ ...6,11d5
< Attaching package: 'lme4'
<
< The following object(s) are masked from 'package:stats':
<
< AIC, BIC
<
171c165
< fm3 7 16519 16567 -8253 0.0 0 1
---
> fm3 7 16519 16567 -8253 0.0 0 <2e-16
212,213c206,207
< school (Intercept) 0.08583 0.293
< Residual 0.56253 0.750
---
> school (Intercept) 0.08583 0.2930
> Residual 0.56253 0.7500
297c291
< Subject (Intercept) 64.0346 8.0022
---
> Subject (Intercept) 64.0345 8.0022
354c348
< fm08 12 649.4 690.8 -312.7 0 0 <2e-16
---
> fm08 12 649.4 690.8 -312.7 1.68e-06 0 <2e-16
356c350
< + logLik(fm08, REML=FALSE), tol=1e-07))
---
> + logLik(fm08, REML=FALSE)))
Running ‘versions.R’ [3s/3s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [30s/31s] OK
- checking re-building of vignette PDFs ... [25s/27s] OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/hornik/tmp/R.check/r-release/Work/PKGS/mlmRev.Rcheck/00check.log’
for details.