• using R version 2.15.0 (2012-03-30)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘lme4/DESCRIPTION’ ... OK
• this is package ‘lme4’ version ‘0.999375-42’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘lme4’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  nlmer : <anonymous>: warning in assign(nm, env = env, mf[[nm]]):
  partial argument match of 'env' to 'envir'
  nlmer : <anonymous>: warning in assign(nm, env = env,
  rep(start$fixef[[nm]], length.out = n)): partial argument match of
  'env' to 'envir'
  printMer: warning in abbreviate(rn, minlen = 11): partial argument
  match of 'minlen' to 'minlength'
  printMer: warning in matrix(format(round(corF@x, 3), nsmall = 3), nc =
  p, dimnames = list(rns, abbreviate(rn, minlen = 6))): partial
  argument match of 'nc' to 'ncol'
  printMer: warning in abbreviate(rn, minlen = 6): partial argument match
  of 'minlen' to 'minlength'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [13s/13s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [59s/59s] OK
  Running ‘Gamma.R’ [5s/5s]
  Running ‘drop.R’ [3s/3s]
  Running ‘extras.R’ [0s/0s]
  Running ‘lmer-1.R’ [6s/6s]
  Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ...138c138
  < 6 -1.7594785
  ---
  > 6 -1.7594786
  432c432
  < group (Intercept) 140.641662 11.85924
  ---
  > group (Intercept) 140.641531 11.85924
  439c439
  < (Intercept) 15.23545 8.40776 1.812
  ---
  > (Intercept) 15.23552 8.40776 1.812
  458c458
  < [1,] 7.18679062
  ---
  > [1,] 7.18678711
  466c466
  < [1] 87.58735
  ---
  > [1] 87.58733
  472c472
  < 1 0 300 900 4
  ---
  > 1 0 300 900 5
  476,477c476,477
  < (Intercept) 15.2354454
  < x 0.1855864
  ---
  > (Intercept) 15.2355231
  > x 0.1855856
  484,487c484,487
  < [1,] -8.35043172
  < [2,] 8.35043172
  < [3,] 0.08457406
  < [4,] -0.08457406
  ---
  > [1,] -8.35048135
  > [2,] 8.35048135
  > [3,] 0.08457456
  > [4,] -0.08457456
  Running ‘lmer-conv.R’ [3s/3s]
  Running ‘lmer.R’ [3s/3s]
  Running ‘nlmer-conv.R’ [17s/17s]
  Running ‘nlmer.R’ [17s/17s]
  Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ...6d5
  < > ## TODO: nicer version of this is in system.file("test-tools.R", package = "Matrix")
  30c29
  < lKa 0.227360 0.47682 NaN
  ---
  > lKa 0.227357 0.47682 NaN
  58c57
  < Subject lKa 0.227490 0.47696
  ---
  > Subject lKa 0.227493 0.47696
  60c59
  < Residual 0.591692 0.76921
  ---
  > Residual 0.591689 0.76921
  67c66
  < lCl -3.23538 0.05236 -61.79
  ---
  > lCl -3.23539 0.05236 -61.79
  Running ‘simulate.R’ [5s/5s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [7s/7s] OK
• checking re-building of vignette PDFs ... [11s/13s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-release/Work/PKGS/lme4.Rcheck/00check.log’
  for details.