• using R version 3.0.1 (2013-05-16)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘lgcp/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘lgcp’ version ‘1.01’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lgcp’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  lambdaEst.ppp: warning in rp.textentry(pancontrol, var = bw, initval =
  bw, action = panfun, title = "bandwidth"): partial argument match of
  'var' to 'variable'
  lambdaEst.ppp: warning in rp.checkbox(pancontrol, var = plotdata,
  action = panfun, labels = "Plot Data", initval = TRUE): partial
  argument match of 'var' to 'variable'
  lambdaEst.ppp: warning in rp.slider(pancontrol, var = pow, from = 0, to
  = 1, initval = 1, action = panfun, showvalue = TRUE, title = "colour
  adjustment"): partial argument match of 'var' to 'variable'
  lambdaEst.stppp: warning in rp.textentry(pancontrol, var = bw, initval
  = bw, action = panfun, title = "bandwidth"): partial argument match
  of 'var' to 'variable'
  lambdaEst.stppp: warning in rp.checkbox(pancontrol, var = plotdata,
  action = panfun, labels = "Plot Data", initval = TRUE): partial
  argument match of 'var' to 'variable'
  lambdaEst.stppp: warning in rp.slider(pancontrol, var = pow, from = 0,
  to = 1, initval = 1, action = panfun, showvalue = TRUE, title =
  "colour adjustment"): partial argument match of 'var' to 'variable'
  spatialparsEst: warning in rp.radiogroup(pancontrol, var = transform,
  values = c("none", "log"), action = panfun, initval = "none"):
  partial argument match of 'var' to 'variable'
  spatialparsEst: warning in rp.radiogroup(pancontrol, var = transform,
  values = c("none", "^1/4"), action = panfun, initval = "^1/4"):
  partial argument match of 'var' to 'variable'
  spatialparsEst: warning in rp.slider(pancontrol, var = sigma, from =
  sigmamin, to = sigmamax, initval = sigmainit, action = panfun,
  showvalue = TRUE): partial argument match of 'var' to 'variable'
  spatialparsEst: warning in rp.slider(pancontrol, var = phi, from =
  phimin, to = phimax, initval = phiinit, action = panfun, showvalue =
  TRUE): partial argument match of 'var' to 'variable'
  thetaEst: warning in rp.textentry(pancontrol, var = sigma, initval =
  sigma, action = panfun): partial argument match of 'var' to
  'variable'
  thetaEst: warning in rp.textentry(pancontrol, var = phi, initval = phi,
  action = panfun): partial argument match of 'var' to 'variable'
  thetaEst: warning in rp.slider(pancontrol, var = theta, from =
  thetamin, to = thetamax, initval = (thetamax - thetamin)/2, action =
  panfun, showvalue = TRUE): partial argument match of 'var' to
  'variable'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [6s/6s] WARNING
  Found the following significant warnings:
  
  Warning: ‘.local’ is deprecated.
  Deprecated functions may be defunct as soon as of the next release of
  R.
  See ?Deprecated.
• checking for unstated dependencies in tests ... OK
• checking tests ... [47s/49s] OK
  Running ‘adaptiveSchemesTest.R’ [5s/5s]
  Running ‘fromSPDFTest.R’ [5s/5s]
  Running ‘gridAverageTest.R’ [5s/5s]
  Running ‘gridSummaryTest.R’ [5s/5s]
  Running ‘iteratorTest.R’ [5s/5s]
  Running ‘lgcpMethodsTest.R’ [9s/11s]
  Running ‘mstpppClassTest.R’ [5s/5s]
  Running ‘stpppClassTest.R’ [5s/5s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [0s/0s] OK
• checking re-building of vignette PDFs ... [0s/0s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-release/Work/PKGS/lgcp.Rcheck/00check.log’
  for details.