• using R version 2.15.0 (2012-03-30)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘haplo.stats/DESCRIPTION’ ... OK
• this is package ‘haplo.stats’ version ‘1.5.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘haplo.stats’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  glm.fit.nowarn: no visible binding for global variable ‘n’
  haplo.glm: no visible binding for global variable ‘eta’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [28s/28s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [98s/98s] OK
  Running ‘test.Ginv.R’ [4s/4s]
  Comparing ‘test.Ginv.Rout’ to ‘test.Ginv.Rout.save’ ...62,66c62,66
  < [1,] 129.301815287 2.020565287 -10.048992 -4.276902e-03 1.4289919
  < [2,] 2.020565287 129.301815287 -10.048992 -4.276899e-03 1.4289919
  < [3,] -10.048991557 -10.048991556 3239.425101 4.098196e+00 -10.6405650
  < [4,] -0.004276908 -0.004276894 4.098196 8.731269e+03 -0.5958504
  < [5,] 1.428991853 1.428991853 -10.640565 -5.958504e-01 255.3999184
  ---
  > [1,] 129.30181529 2.020565287 -10.048992 -4.276933e-03 1.4289919
  > [2,] 2.02056529 129.301815287 -10.048992 -4.276852e-03 1.4289919
  > [3,] -10.04899156 -10.048991553 3239.425101 4.098196e+00 -10.6405650
  > [4,] -0.00427691 -0.004276945 4.098196 8.731269e+03 -0.5958503
  > [5,] 1.42899185 1.428991852 -10.640565 -5.958504e-01 255.3999184
  Running ‘test.haplo.em.R’ [27s/27s]
  Comparing ‘test.haplo.em.Rout’ to ‘test.haplo.em.Rout.save’ ...16,17c16,17
  < R version 2.15.0 (2012-03-30)
  < Platform: i686-pc-linux-gnu (32-bit)
  ---
  > R version 2.14.0 (2011-10-31)
  > Platform: x86_64-unknown-linux-gnu (64-bit)
  Running ‘test.haplo.power.R’ [1s/1s]
  Comparing ‘test.haplo.power.Rout’ to ‘test.haplo.power.Rout.save’ ...23,24c23,24
  < R version 2.15.0 (2012-03-30)
  < Platform: i686-pc-linux-gnu (32-bit)
  ---
  > R version 2.14.0 (2011-10-31)
  > Platform: x86_64-unknown-linux-gnu (64-bit)
  Running ‘test.methods.haplo.glm.R’ [66s/66s]
  Comparing ‘test.methods.haplo.glm.Rout’ to ‘test.methods.haplo.glm.Rout.save’ ...14,15c14,15
  < R version 2.15.0 (2012-03-30)
  < Platform: i686-pc-linux-gnu (32-bit)
  ---
  > R version 2.14.0 (2011-10-31)
  > Platform: x86_64-unknown-linux-gnu (64-bit)
  201c201
  < hap.rare -4.058363e-08 3.310615e-08 1.093231e-08 -1.238478e-09
  ---
  > hap.rare -4.058363e-08 3.310615e-08 1.093231e-08 -1.238479e-09
  216c216
  < hap.34 -2.569089e-09 8.519475e-10 1.374934e-08 8.440416e-09
  ---
  > hap.34 -2.569089e-09 8.519476e-10 1.374934e-08 8.440416e-09
  222,223c222
  < hap.rare -2.569089e-09 8.519474e-10 1.374934e-08 8.440416e-09
  < hap.rare -2.569089e-09 8.519474e-10 1.374934e-08 8.440416e-09
  ---
  > hap.rare -2.569089e-09 8.519473e-10 1.374934e-08 8.440416e-09
  224a224
  > hap.rare -2.569089e-09 8.519474e-10 1.374934e-08 8.440416e-09
  232c232
  < geno.78 8.481883e-02 -3.191332e-06 8.519475e-10 8.519474e-10
  ---
  > geno.78 8.481883e-02 -3.191332e-06 8.519477e-10 8.519475e-10
  251,252c251,252
  < geno.34 2.951258e-07 -3.077285e-06 -1.087524e-05 -1.238479e-09
  < geno.77 3.153900e-07 -4.343015e-06 -1.246208e-05 -2.569089e-09
  ---
  > geno.34 2.951258e-07 -3.077285e-06 -1.087524e-05 -1.238478e-09
  > geno.77 3.153900e-07 -4.343015e-06 -1.246208e-05 -2.569090e-09
  274c274
  < geno.78 8.519475e-10 8.519474e-10 8.519477e-10 1.703895e-09
  ---
  > geno.78 8.519475e-10 8.519473e-10 8.519475e-10 1.703894e-09
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-release/Work/PKGS/haplo.stats.Rcheck/00check.log’
  for details.