• using R version 3.0.1 (2013-05-16)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘gnm/DESCRIPTION’ ... OK
• this is package ‘gnm’ version ‘1.0-6’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gnm’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [19s/19s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [31s/31s] OK
  Running ‘RC.R’ [2s/2s]
  Comparing ‘RC.Rout’ to ‘RC.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  Running ‘RChomog.R’ [3s/3s]
  Comparing ‘RChomog.Rout’ to ‘RChomog.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  Running ‘biplot.R’ [3s/3s]
  Comparing ‘biplot.Rout’ to ‘biplot.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  Running ‘bwt.R’ [3s/3s]
  Comparing ‘bwt.Rout’ to ‘bwt.Rout.save’ ...48a49
  > Loading Tcl/Tk interface ... done
  Running ‘diagonalRef.R’ [2s/2s]
  Comparing ‘diagonalRef.Rout’ to ‘diagonalRef.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  Running ‘doubleUnidiff.R’ [3s/3s]
  Comparing ‘doubleUnidiff.Rout’ to ‘doubleUnidiff.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  Running ‘gammi.R’ [3s/3s]
  Comparing ‘gammi.Rout’ to ‘gammi.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  15c16
  < Running main iterations.......................................................
  ---
  > Running main iterations........................................................
  Running ‘logexcess.R’ [2s/2s]
  Comparing ‘logexcess.Rout’ to ‘logexcess.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  Running ‘logistic.R’ [2s/2s]
  Comparing ‘logistic.Rout’ to ‘logistic.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  Running ‘nls.R’ [2s/2s]
  Comparing ‘nls.Rout’ to ‘nls.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  Running ‘stereotype.R’ [2s/2s]
  Comparing ‘stereotype.Rout’ to ‘stereotype.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
  Running ‘unidiff.R’ [3s/3s]
  Comparing ‘unidiff.Rout’ to ‘unidiff.Rout.save’ ...3a4
  > Loading Tcl/Tk interface ... done
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [12s/12s] OK
• checking re-building of vignette PDFs ... [15s/16s] OK
• checking PDF version of manual ... OK