• using R version 2.15.0 (2012-03-30)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘glmmGS/DESCRIPTION’ ... OK
• this is package ‘glmmGS’ version ‘0.5-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘glmmGS’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... NOTE
  prepare_Rd: glmmGS.Control.Rd:50-52: Dropping empty section \note
  prepare_Rd: glmmGS.Control.Rd:43-45: Dropping empty section \references
  prepare_Rd: glmmGS.CovarianceModel.Rd:31-33: Dropping empty section \details
  prepare_Rd: glmmGS.CovarianceModel.Rd:50-52: Dropping empty section \note
  prepare_Rd: glmmGS.CovarianceModel.Rd:43-45: Dropping empty section \references
  prepare_Rd: glmmGS.SparseMatrix.Rd:54-56: Dropping empty section \note
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File ‘/home/hornik/tmp/R.check/r-release/Work/build/Packages/glmmGS/libs/glmmGS.so’:
  Found ‘printf’, possibly from ‘printf’ (C)
  Objects: ‘Utilities/LDL/Internal/amd_global.o’,
  ‘GlmmGS/GlmmGSSolver.o’
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
  Objects:
  ‘GlmmGS/RandomEffects/Working/Global/CovarianceModels/ICovarianceModel.o’,
  ‘GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/ICovarianceModel.o’
  Found ‘stdout’, possibly from ‘stdout’ (C)
  Objects: ‘GlmmGSRAPI.o’, ‘Utilities/IO/Stream.o’
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
• checking examples ... [20s/31s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/hornik/tmp/R.check/r-release/Work/PKGS/glmmGS.Rcheck/00check.log’
  for details.