• using R version 2.7.2 (2008-08-25)
  • using session charset: UTF-8
  • checking for file 'compositions/DESCRIPTION' ... OK
    •
  • this is package 'compositions' version '0.91-6'
  • checking package dependencies ... OK
    •
  • checking if this is a source package ... OK
    •
  • checking whether package 'compositions' can be installed ... OK
    •
  • checking package directory ... OK
    •
  • checking for portable file names ... OK
    •
  • checking for sufficient/correct file permissions ... OK
    •
  • checking DESCRIPTION meta-information ... OK
    •
  • checking top-level files ... OK
    •
  • checking index information ... OK
    •
  • checking package subdirectories ... OK
    •
  • checking R files for non-ASCII characters ... OK
    •
  • checking R files for syntax errors ... OK
    •
  • checking whether the package can be loaded ... OK
    •
  • checking whether the package can be loaded with stated dependencies ... OK
    •
  • checking for unstated dependencies in R code ... OK
    •
  • checking S3 generic/method consistency ... OK
    •
  • checking replacement functions ... OK
    •
  • checking foreign function calls ... OK
    •
  • checking R code for possible problems ... NOTE
    Found possibly global 'T' or 'F' in the following functions:
    boxplot.acomp boxplot.rcomp
  • checking Rd files ... WARNING
    Rd files without 'description':
    plot.Rd
    plotpos.Rd
    scalar.Rd
    These entries are required in an Rd file.

    See the chapter 'Writing R documentation files' in manual 'Writing R
    Extensions'.
  • checking Rd cross-references ... OK
    •
  • checking for missing documentation entries ... OK
    •
  • checking for code/documentation mismatches ... OK
    •
  • checking Rd \usage sections ... NOTE
    S3 methods shown with full name in documentation object 'cdt':
    cdt.inv

    S3 methods shown with full name in documentation object 'idt':
    idt.inv

    S3 methods shown with full name in documentation object 'meanrow':
    mean.row mean.col

    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter 'Writing R documentation files' in manual 'Writing R
    Extensions'.
  • checking data for non-ASCII characters ... OK
    •
  • creating compositions-Ex.R ... OK
    •
  • checking examples ... OK
    •
  • checking tests ... ERROR
    Running the tests in 'tests/TestSimp.R' failed.
    Last 13 lines of output:
    >
    > plot(aplus(cdata[,1:2]))
    > ellipses(aplus(mean(aplus(cdata[,1:2]))), var(aplus(cdata[,1:2])),col="red",r=2)
    > ellipses(rplus(mean(rplus(cdata[,1:2]))), var(rplus(cdata[,1:2])),col="blue",r=2)
    >
    >
    > straight(acomp(c(1,1,1)),c(2,1,3))
    >
    >
    > boxplot(rcomp(cdata[,-1]),cdata$Cd)
    Error in cdata$Cd : $ operator is invalid for atomic vectors
    Calls: boxplot -> boxplot.rcomp
    Execution halted