- using R version 2.14.1 (2011-12-22)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- using option ‘--no-vignettes’
- checking for file ‘cobs/DESCRIPTION’ ... OK
- this is package ‘cobs’ version ‘1.2-2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘cobs’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
plot.cobs: warning in deparse(x$call, width.cut = 100): partial
argument match of 'width.cut' to 'width.cutoff'
plot.cobs: warning in formatC(x$lambda, dig = 3): partial argument
match of 'dig' to 'digits'
summary.cobs: warning in .print.part(object$coef, nMin = 7, nam =
"coef", digits = digits): partial argument match of 'nam' to 'namX'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ... OK
Running ‘ex1.R’
Comparing ‘ex1.Rout’ to ‘ex1.Rout.save’ ...409c409,410
< [1,] 2.30776 16 18 250.3 7.5999 11
---
> [1,] 2.30776 16 18 250.300 7.59990 11
> [2,] 4.51708 16 18 258.955 1.78571 6
569,572c570,573
< [1,] 0.00547257 15 18 263.500 4.00000 18
< [2,] 0.30774511 12 18 263.500 4.00000 18
< [3,] 1.17902900 15 18 263.944 1.77778 16
< [4,] 2.30776272 16 18 264.750 1.00000 15
---
> [1,] 0.00279592 15 18 263.50 4 18
> [2,] 0.00547257 15 18 263.50 4 18
> [3,] 0.30774511 12 18 263.50 4 18
> [4,] 2.30776272 16 18 264.75 1 15
606c607
< $ ifl : int [1:25] 1 18 1 1 1 1 1 18 1 18 ...
---
> $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ...
618c619
< 8 -15.261611 -6.733216 10.66814 28.0695 36.5979
---
> 8 -15.261611 -6.733215 10.66814 28.0695 36.5979
902c903
< R^2 = 95.93% ; empirical tau (over all): 246/500 = 0.492 (target tau= 0.5)
---
> R^2 = 95.93% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5)
912,914d912
< Warning message:
< In cobs(x, y, "decrease", knots = ux, nknots = length(ux), degree = 1) :
< Check 'ifl'
918,921d915
<
< **** ERROR in algorithm: ifl = 18
<
<
925c919
< R^2 = 96.02% ; empirical tau (over all): 250/500 = 0.5 (target tau= 0.5)
---
> R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5)
Running ‘ex2-long.R’
Comparing ‘ex2-long.Rout’ to ‘ex2-long.Rout.save’ ...719c719
< [61] -0.0094285 432.6957848
---
> [61] -0.0094285 432.6957858
1356c1356
< $ icyc : int 51
---
> $ icyc : int 50
1477c1477
< [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84422
---
> [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235
1484c1484
< [1] 0.81487
---
> [1] 0.81529
Running ‘ex3.R’
Comparing ‘ex3.Rout’ to ‘ex3.Rout.save’ ... OK
Running ‘multi-constr.R’
Comparing ‘multi-constr.Rout’ to ‘multi-constr.Rout.save’ ... OK
Running ‘pt-ex.R’
Running ‘roof.R’
Comparing ‘roof.Rout’ to ‘roof.Rout.save’ ... OK
Running ‘small-ex.R’
Comparing ‘small-ex.Rout’ to ‘small-ex.Rout.save’ ... OK
Running ‘spline-ex.R’
Comparing ‘spline-ex.Rout’ to ‘spline-ex.Rout.save’ ... OK
Running ‘temp.R’
Comparing ‘temp.Rout’ to ‘temp.Rout.save’ ... OK
Running ‘wind.R’
Comparing ‘wind.Rout’ to ‘wind.Rout.save’ ...233,235d232
< WARNING: Some lambdas had problems in rq.fit.sfnc():
< lambda icyc ifl fidel sum|res|_s k
< [1,] 757412.8 53 18 6063.759 0.0005256656 4
246,248d242
< Warning message:
< In cobs(day, speed, knots.add = TRUE, constraint = "periodic", nknots = 10, :
< Check 'ifl'
252,254c246
< * Warning in algorithm: some ifl != 1
<
< {tau=0.9}-quantile; dimensionality of fit: 12 from {13,12,10,9,7,4,14}
---
> {tau=0.9}-quantile; dimensionality of fit: 12 from {13,12,10,9,7,14}
387c379
< empirical tau (over all): 658/6574 = 0.1000913 (target tau= 0.1)
---
> empirical tau (over all): 657/6574 = 0.09993915 (target tau= 0.1)
- checking PDF version of manual ... OK