- using R version 3.0.1 (2013-05-16)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘censReg/DESCRIPTION’ ... OK
- this is package ‘censReg’ version ‘0.5-16’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘censReg’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
censReg: no visible binding for global variable ‘validObs2’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [7s/7s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [92s/92s] OK
Running ‘censRegPanelLargerTest.R’ [4s/4s]
Comparing ‘censRegPanelLargerTest.Rout’ to ‘censRegPanelLargerTest.Rout.save’ ...8c8
< The following object is masked from 'package:base':
---
> The following object(s) are masked from 'package:base':
15c15
< The following object is masked from 'package:base':
---
> The following object(s) are masked from 'package:base':
Running ‘censRegPanelTest.R’ [59s/59s]
Comparing ‘censRegPanelTest.Rout’ to ‘censRegPanelTest.Rout.save’ ...8c8
< The following object is masked from 'package:base':
---
> The following object(s) are masked from 'package:base':
15c15
< The following object is masked from 'package:base':
---
> The following object(s) are masked from 'package:base':
127c127
< (Intercept) 0.225109672 -0.020570168 -0.254602886 -0.023824162 -0.002973952
---
> (Intercept) 0.225109671 -0.020570168 -0.254602886 -0.023824162 -0.002973952
129c129
< x2 -0.254602886 0.008562225 0.454125882 0.017179542 0.001505438
---
> x2 -0.254602886 0.008562225 0.454125881 0.017179542 0.001505438
134c134
< (Intercept) 0.225109672 -0.020570168 -0.254602886 -0.020929366 -0.002937279
---
> (Intercept) 0.225109671 -0.020570168 -0.254602886 -0.020929366 -0.002937279
136c136
< x2 -0.254602886 0.008562225 0.454125882 0.015092113 0.001486874
---
> x2 -0.254602886 0.008562225 0.454125881 0.015092113 0.001486874
143c143
< x2 2.24054376 0.6738886 3.32479829 8.848252e-04
---
> x2 2.24054376 0.6738886 3.32479830 8.848252e-04
172c172
< 1.712628e-11 4.533923e-11 1.345466e-11 8.216067e-12 6.209078e-11
---
> 1.711386e-11 4.533762e-11 1.344722e-11 8.216400e-12 6.207498e-11
606c606
< -0.3662 1.6800 2.2415 -0.1295 -0.0124
---
> -0.36750 1.67993 2.24379 -0.12947 -0.01241
611c611
< BFGSR maximization, 88 iterations
---
> BFGSR maximization, 78 iterations
613c613
< Log-Likelihood: -73.19882
---
> Log-Likelihood: -73.19883
617,621c617,621
< (Intercept) -0.366225 0.474525 -0.7718 0.4402491
< x1 1.680034 0.209230 8.0296 9.78e-16 ***
< x2 2.241459 0.673925 3.3260 0.0008811 ***
< logSigmaMu -0.129480 0.258058 -0.5017 0.6158443
< logSigmaNu -0.012398 0.129692 -0.0956 0.9238445
---
> (Intercept) -0.367502 0.474613 -0.7743 0.4387426
> x1 1.679929 0.209229 8.0291 9.816e-16 ***
> x2 2.243794 0.673969 3.3292 0.0008709 ***
> logSigmaMu -0.129473 0.258047 -0.5017 0.6158482
> logSigmaNu -0.012409 0.129690 -0.0957 0.9237740
636,640c636,640
< (Intercept) -0.3662 0.4745 -0.772 0.440249
< x1 1.6800 0.2092 8.030 9.78e-16 ***
< x2 2.2415 0.6739 3.326 0.000881 ***
< logSigmaMu -0.1295 0.2581 -0.502 0.615844
< logSigmaNu -0.0124 0.1297 -0.096 0.923844
---
> (Intercept) -0.36750 0.47461 -0.774 0.438743
> x1 1.67993 0.20923 8.029 9.82e-16 ***
> x2 2.24379 0.67397 3.329 0.000871 ***
> logSigmaMu -0.12947 0.25805 -0.502 0.615848
> logSigmaNu -0.01241 0.12969 -0.096 0.923774
644c644
< BFGSR maximization, 88 iterations
---
> BFGSR maximization, 78 iterations
646c646
< Log-likelihood: -73.19882 on 5 Df
---
> Log-likelihood: -73.19883 on 5 Df
650c650
< [1] -73.19882
---
> [1] -73.19883
654c654
< -0.36622543 1.68003374 2.24145923 -0.12948044 -0.01239752
---
> -0.36750163 1.67992931 2.24379444 -0.12947348 -0.01240886
658c658
< 0.0010576439 0.0002184746 -0.0014136045 -0.0003163291 -0.0004015533
---
> 0.0014212306 0.0034992596 -0.0064419525 0.0003782988 0.0003341343
662,666c662,666
< (Intercept) -13.319730 -4.096316 -7.3066365 -2.1114073 -1.3063607
< x1 -4.096316 -26.075411 -1.9902318 4.4844486 4.7616489
< x2 -7.306637 -1.990232 -6.2357503 -0.6251063 -0.4758868
< logSigmaMu -2.111407 4.484449 -0.6251063 -16.6613646 -3.7215670
< logSigmaNu -1.306361 4.761649 -0.4758868 -3.7215670 -61.0658660
---
> (Intercept) -13.317517 -4.096146 -7.3057987 -2.1155739 -1.300861
> x1 -4.096146 -26.075639 -1.9898094 4.4840349 4.755412
> x2 -7.305799 -1.989809 -6.2353998 -0.6259168 -0.464233
> logSigmaMu -2.115574 4.484035 -0.6259168 -16.6651955 -3.721179
> logSigmaNu -1.300861 4.755412 -0.4642330 -3.7211788 -61.065093
682c682
< [1] 88
---
> [1] 78
689,703c689,703
< [1,] -0.85292572 0.2253560 -0.07271637 -0.1440946 -0.9618381
< [2,] -1.70302586 0.0481921 -1.18995334 1.6809127 -1.0132185
< [3,] 1.75068148 0.3336095 1.72718373 1.8353166 1.8031018
< [4,] 0.15573173 -0.2025070 -0.43242741 -0.6890982 -1.4342164
< [5,] 0.12954750 0.9841467 0.68916448 -0.6770074 -0.5553447
< [6,] 0.33031724 -0.3088303 0.38458427 -0.4921064 -1.5797587
< [7,] -0.08181966 -3.1852914 -0.23718510 -0.6767144 6.0277649
< [8,] -0.26667907 0.3787460 0.05567023 -0.5386512 -1.1090284
< [9,] 1.14829558 0.5939320 0.30327528 0.1331987 -1.6170222
< [10,] -0.43484484 -0.4061924 -0.15239456 -0.4689052 -1.9365557
< [11,] -0.02830061 1.4482595 -0.64415224 -0.9174295 2.7359112
< [12,] 1.21038176 0.5369097 0.61298880 0.2054354 -1.7348950
< [13,] 0.53601259 -0.2252415 0.33117531 -0.3690040 -1.4083281
< [14,] -1.81452195 -1.3062514 -0.91952922 1.9574102 2.5809286
< [15,] -0.07779253 1.0853810 -0.45709748 -0.8395791 0.2020978
---
> [1,] -0.85278081 0.2247850 -0.07302970 -0.1442070 -0.9634923
> [2,] -1.70342425 0.0476419 -1.19055345 1.6820162 -1.0127268
> [3,] 1.75059965 0.3340379 1.72645582 1.8351650 1.8000202
> [4,] 0.15552297 -0.2026892 -0.43296702 -0.6893599 -1.4315786
> [5,] 0.12953233 0.9838683 0.68846571 -0.6770129 -0.5576955
> [6,] 0.33020957 -0.3070305 0.38415893 -0.4921914 -1.5806796
> [7,] -0.08124385 -3.1854369 -0.23706941 -0.6768114 6.0284476
> [8,] -0.26650783 0.3785437 0.05560267 -0.5386742 -1.1090288
> [9,] 1.14849813 0.5942606 0.30325840 0.1336487 -1.6163416
> [10,] -0.43466534 -0.4056715 -0.15242875 -0.4690608 -1.9368240
> [11,] -0.02815366 1.4492071 -0.64446998 -0.9176305 2.7387662
> [12,] 1.21036511 0.5376472 0.61231215 0.2052291 -1.7342086
> [13,] 0.53592238 -0.2250517 0.33100094 -0.3690601 -1.4085335
> [14,] -1.81473915 -1.3068211 -0.91982779 1.9580283 2.5799493
> [15,] -0.07771403 1.0862084 -0.45735047 -0.8397008 0.2042601
808c808
< 4.63023 1.68034 2.24703 -0.12919 -0.01238
---
> 4.62970 1.67974 2.24826 -0.12967 -0.01247
813c813
< BFGSR maximization, 80 iterations
---
> BFGSR maximization, 75 iterations
815c815
< Log-Likelihood: -73.19887
---
> Log-Likelihood: -73.19889
819,823c819,823
< (Intercept) 4.630226 0.474887 9.7502 < 2.2e-16 ***
< x1 1.680342 0.209279 8.0292 9.811e-16 ***
< x2 2.247034 0.674112 3.3333 0.0008581 ***
< logSigmaMu -0.129193 0.257996 -0.5008 0.6165418
< logSigmaNu -0.012383 0.129699 -0.0955 0.9239408
---
> (Intercept) 4.629702 0.474777 9.7513 < 2.2e-16 ***
> x1 1.679738 0.209226 8.0284 9.878e-16 ***
> x2 2.248262 0.674033 3.3355 0.0008513 ***
> logSigmaMu -0.129673 0.258097 -0.5024 0.6153734
> logSigmaNu -0.012466 0.129691 -0.0961 0.9234264
838,842c838,842
< (Intercept) 4.63023 0.47489 9.750 < 2e-16 ***
< x1 1.68034 0.20928 8.029 9.81e-16 ***
< x2 2.24703 0.67411 3.333 0.000858 ***
< logSigmaMu -0.12919 0.25800 -0.501 0.616542
< logSigmaNu -0.01238 0.12970 -0.095 0.923941
---
> (Intercept) 4.62970 0.47478 9.751 < 2e-16 ***
> x1 1.67974 0.20923 8.028 9.88e-16 ***
> x2 2.24826 0.67403 3.336 0.000851 ***
> logSigmaMu -0.12967 0.25810 -0.502 0.615373
> logSigmaNu -0.01247 0.12969 -0.096 0.923426
846c846
< BFGSR maximization, 80 iterations
---
> BFGSR maximization, 75 iterations
848c848
< Log-likelihood: -73.19887 on 5 Df
---
> Log-likelihood: -73.19889 on 5 Df
852c852
< 4.63022627 1.68034154 2.24703421 -0.12919327 -0.01238251
---
> 4.62970160 1.67973837 2.24826176 -0.12967269 -0.01246575
855c855
< 4.6302263 1.6803415 2.2470342 0.8788041 0.9876938
---
> 4.6297016 1.6797384 2.2482618 0.8783829 0.9876116
858,862c858,862
< (Intercept) 0.225517396 -0.020667352 -0.254934450 -0.024025577 -0.003044199
< x1 -0.020667352 0.043797574 0.008664767 0.013419202 0.002974552
< x2 -0.254934450 0.008664767 0.454426527 0.017309195 0.001673639
< logSigmaMu -0.024025577 0.013419202 0.017309195 0.066561774 -0.002626682
< logSigmaNu -0.003044199 0.002974552 0.001673639 -0.002626682 0.016821933
---
> (Intercept) 0.225413235 -0.020660460 -0.254872111 -0.024058747 -0.003055367
> x1 -0.020660460 0.043775353 0.008670292 0.013424948 0.002954403
> x2 -0.254872111 0.008670292 0.454320177 0.017344565 0.001704899
> logSigmaMu -0.024058747 0.013424948 0.017344565 0.066614118 -0.002644224
> logSigmaNu -0.003055367 0.002954403 0.001704899 -0.002644224 0.016819840
865,869c865,869
< (Intercept) 0.225517396 -0.020667352 -0.254934450 -0.021113776 -0.003006736
< x1 -0.020667352 0.043797574 0.008664767 0.011792850 0.002937946
< x2 -0.254934450 0.008664767 0.454426527 0.015211391 0.001653043
< sigmaMu -0.021113776 0.011792850 0.015211391 0.051405435 -0.002279932
< sigmaNu -0.003006736 0.002937946 0.001653043 -0.002279932 0.016410454
---
> (Intercept) 0.225413235 -0.020660460 -0.254872111 -0.021132792 -0.003017516
> x1 -0.020660460 0.043775353 0.008670292 0.011792244 0.002917803
> x2 -0.254872111 0.008670292 0.454320177 0.015235169 0.001683778
> sigmaMu -0.021132792 0.011792244 0.015235169 0.051396556 -0.002293867
> sigmaNu -0.003017516 0.002917803 0.001683778 -0.002293867 0.016405681
871c871
< 'log Lik.' -73.19887 (df=5)
---
> 'log Lik.' -73.19889 (df=5)
875c875
< [1] -40.0000 156.3977
---
> [1] -40.0000 156.3978
878c878
< [1] -73.19887
---
> [1] -73.19889
882c882
< 4.63022627 1.68034154 2.24703421 -0.12919327 -0.01238251
---
> 4.62970160 1.67973837 2.24826176 -0.12967269 -0.01246575
886c886
< 0.0056892142 -0.0030054755 -0.0110529558 0.0002431512 0.0011109737
---
> 0.007307875 0.009883823 -0.013334396 0.006186400 0.005241257
890,894c890,894
< (Intercept) -13.308602 -4.095168 -7.3021849 -2.130164 -1.2903856
< x1 -4.095168 -26.068472 -1.9886374 4.482611 4.7662875
< x2 -7.302185 -1.988637 -6.2334972 -0.631501 -0.4482317
< logSigmaMu -2.130164 4.482611 -0.6315010 -16.678807 -3.7196332
< logSigmaNu -1.290386 4.766287 -0.4482317 -3.719633 -61.0587302
---
> (Intercept) -13.320457 -4.097602 -7.3082204 -2.1336126 -1.2945958
> x1 -4.097602 -26.078345 -1.9899709 4.4821291 4.7426563
> x2 -7.308220 -1.989971 -6.2371991 -0.6321033 -0.4451737
> logSigmaMu -2.133613 4.482129 -0.6321033 -16.6692492 -3.7313402
> logSigmaNu -1.294596 4.742656 -0.4451737 -3.7313402 -61.0632866
910c910
< [1] 80
---
> [1] 75
917,931c917,931
< [1,] -0.85236871 0.22352863 -0.07358639 -0.1443993 -0.9671304
< [2,] -1.70309248 0.04656951 -1.19082429 1.6824387 -1.0125584
< [3,] 1.74990148 0.33281894 1.72509446 1.8348465 1.7961621
< [4,] 0.15545856 -0.20324750 -0.43359126 -0.6891269 -1.4282938
< [5,] 0.12980220 0.98288933 0.68752119 -0.6769143 -0.5612306
< [6,] 0.32990374 -0.30669751 0.38381348 -0.4921689 -1.5816926
< [7,] -0.08005647 -3.18629982 -0.23686600 -0.6771436 6.0328067
< [8,] -0.26567628 0.37789051 0.05573250 -0.5390071 -1.1085805
< [9,] 1.14874910 0.59346211 0.30325990 0.1346430 -1.6156325
< [10,] -0.43390950 -0.40526935 -0.15214741 -0.4695670 -1.9367105
< [11,] -0.02783269 1.45004343 -0.64465012 -0.9182595 2.7414941
< [12,] 1.20995321 0.53816999 0.61130580 0.2047821 -1.7335125
< [13,] 0.53661340 -0.22541847 0.33123103 -0.3683372 -1.4083949
< [14,] -1.81459042 -1.30830545 -0.92006634 1.9589715 2.5777912
< [15,] -0.07716595 1.08686018 -0.45727951 -0.8405148 0.2065934
---
> [1,] -0.85234478 0.22391255 -0.07352168 -0.1446474 -0.9667939
> [2,] -1.70440691 0.04648408 -1.19187418 1.6836901 -1.0116930
> [3,] 1.75174657 0.33535241 1.72587454 1.8367494 1.7958201
> [4,] 0.15579094 -0.20309642 -0.43362554 -0.6891859 -1.4267967
> [5,] 0.12991963 0.98333538 0.68739315 -0.6767124 -0.5620972
> [6,] 0.33086011 -0.30311404 0.38387759 -0.4917565 -1.5823937
> [7,] -0.07989148 -3.18597288 -0.23681005 -0.6769023 6.0302925
> [8,] -0.26596451 0.37804584 0.05556194 -0.5387087 -1.1089943
> [9,] 1.14932504 0.59476363 0.30337878 0.1352853 -1.6147885
> [10,] -0.43413381 -0.40461336 -0.15239416 -0.4696682 -1.9371976
> [11,] -0.02782997 1.45111717 -0.64509342 -0.9178916 2.7444007
> [12,] 1.21065533 0.53914179 0.61120668 0.2059469 -1.7330972
> [13,] 0.53650159 -0.22510291 0.33108334 -0.3687683 -1.4084656
> [14,] -1.81538737 -1.30822940 -0.92054812 1.9588064 2.5784263
> [15,] -0.07753252 1.08785999 -0.45784326 -0.8400504 0.2086192
997c997
< 0.3662 -1.6800 -2.2415 -0.1295 -0.0124
---
> 0.36750 -1.67993 -2.24379 -0.12947 -0.01241
1002c1002
< BFGSR maximization, 88 iterations
---
> BFGSR maximization, 78 iterations
1004c1004
< Log-Likelihood: -73.19882
---
> Log-Likelihood: -73.19883
1008,1012c1008,1012
< (Intercept) 0.366225 0.474525 0.7718 0.4402491
< x1 -1.680034 0.209230 -8.0296 9.78e-16 ***
< x2 -2.241459 0.673925 -3.3260 0.0008811 ***
< logSigmaMu -0.129480 0.258058 -0.5017 0.6158443
< logSigmaNu -0.012398 0.129692 -0.0956 0.9238445
---
> (Intercept) 0.367502 0.474613 0.7743 0.4387426
> x1 -1.679929 0.209229 -8.0291 9.816e-16 ***
> x2 -2.243794 0.673969 -3.3292 0.0008709 ***
> logSigmaMu -0.129473 0.258047 -0.5017 0.6158482
> logSigmaNu -0.012409 0.129690 -0.0957 0.9237740
1028,1032c1028,1032
< (Intercept) 0.3662 0.4745 0.772 0.440249
< x1 -1.6800 0.2092 -8.030 9.78e-16 ***
< x2 -2.2415 0.6739 -3.326 0.000881 ***
< logSigmaMu -0.1295 0.2581 -0.502 0.615844
< logSigmaNu -0.0124 0.1297 -0.096 0.923844
---
> (Intercept) 0.36750 0.47461 0.774 0.438743
> x1 -1.67993 0.20923 -8.029 9.82e-16 ***
> x2 -2.24379 0.67397 -3.329 0.000871 ***
> logSigmaMu -0.12947 0.25805 -0.502 0.615848
> logSigmaNu -0.01241 0.12969 -0.096 0.923774
1036c1036
< BFGSR maximization, 88 iterations
---
> BFGSR maximization, 78 iterations
1038c1038
< Log-likelihood: -73.19882 on 5 Df
---
> Log-likelihood: -73.19883 on 5 Df
1042c1042
< 0.36622543 -1.68003374 -2.24145923 -0.12948044 -0.01239752
---
> 0.36750163 -1.67992931 -2.24379444 -0.12947348 -0.01240886
1045c1045
< 0.3662254 -1.6800337 -2.2414592 0.8785518 0.9876790
---
> 0.3675016 -1.6799293 -2.2437944 0.8785579 0.9876678
1048,1052c1048,1052
< (Intercept) 0.225173988 -0.020584320 -0.254655034 0.023854730 0.002983824
< x1 -0.020584320 0.043777337 0.008576581 -0.013406137 -0.002970064
< x2 -0.254655034 0.008576581 0.454175356 -0.017198084 -0.001529006
< logSigmaMu 0.023854730 -0.013406137 -0.017198084 0.066594107 -0.002636834
< logSigmaNu 0.002983824 -0.002970064 -0.001529006 -0.002636834 0.016819967
---
> (Intercept) 0.22525765 -0.020606031 -0.254727485 0.023900534 0.003010360
> x1 -0.02060603 0.043776857 0.008606687 -0.013409282 -0.002965503
> x2 -0.25472748 0.008606687 0.454234549 -0.017236296 -0.001593108
> logSigmaMu 0.02390053 -0.013409282 -0.017236296 0.066588439 -0.002635405
> logSigmaNu 0.00301036 -0.002965503 -0.001593108 -0.002635405 0.016819519
1055,1059c1055,1059
< (Intercept) 0.22517399 -0.020584320 -0.254655034 0.020957615 0.002947060
< x1 -0.02058432 0.043777337 0.008576581 -0.011777985 -0.002933470
< x2 -0.25465503 0.008576581 0.454175356 -0.015109407 -0.001510168
< sigmaMu 0.02095762 -0.011777985 -0.015109407 0.051400877 -0.002288053
< sigmaNu 0.00294706 -0.002933470 -0.001510168 -0.002288053 0.016408043
---
> (Intercept) 0.225257647 -0.020606031 -0.254727485 0.020998003 0.002973236
> x1 -0.020606031 0.043776857 0.008606687 -0.011780830 -0.002928932
> x2 -0.254727485 0.008606687 0.454234549 -0.015143084 -0.001573462
> sigmaMu 0.020998003 -0.011780830 -0.015143084 0.051397216 -0.002286802
> sigmaNu 0.002973236 -0.002928932 -0.001573462 -0.002286802 0.016407234
1061c1061
< 'log Lik.' -73.19882 (df=5)
---
> 'log Lik.' -73.19883 (df=5)
1063c1063
< [1] -40.0000 156.3976
---
> [1] -40.0000 156.3977
1066c1066
< [1] -73.19882
---
> [1] -73.19883
1070c1070
< 0.36622543 -1.68003374 -2.24145923 -0.12948044 -0.01239752
---
> 0.36750163 -1.67992931 -2.24379444 -0.12947348 -0.01240886
1074c1074
< -0.0010576436 -0.0002184744 0.0014136041 -0.0003163289 -0.0004015520
---
> -0.0014212306 -0.0034992596 0.0064419525 0.0003782988 0.0003341343
1078,1082c1078,1082
< (Intercept) -13.319730 -4.096316 -7.3066365 2.1114073 1.3063607
< x1 -4.096316 -26.075411 -1.9902318 -4.4844486 -4.7616489
< x2 -7.306637 -1.990232 -6.2357503 0.6251063 0.4758868
< logSigmaMu 2.111407 -4.484449 0.6251063 -16.6613646 -3.7215670
< logSigmaNu 1.306361 -4.761649 0.4758868 -3.7215670 -61.0658660
---
> (Intercept) -13.317517 -4.096146 -7.3057987 2.1155739 1.300861
> x1 -4.096146 -26.075639 -1.9898094 -4.4840349 -4.755412
> x2 -7.305799 -1.989809 -6.2353998 0.6259168 0.464233
> logSigmaMu 2.115574 -4.484035 0.6259168 -16.6651955 -3.721179
> logSigmaNu 1.300861 -4.755412 0.4642330 -3.7211788 -61.065093
1098c1098
< [1] 88
---
> [1] 78
1105,1119c1105,1119
< [1,] 0.85292572 -0.2253560 0.07271637 -0.1440946 -0.9618381
< [2,] 1.70302586 -0.0481921 1.18995334 1.6809127 -1.0132185
< [3,] -1.75068148 -0.3336095 -1.72718373 1.8353166 1.8031018
< [4,] -0.15573173 0.2025070 0.43242741 -0.6890982 -1.4342164
< [5,] -0.12954750 -0.9841467 -0.68916448 -0.6770074 -0.5553447
< [6,] -0.33031724 0.3088303 -0.38458427 -0.4921064 -1.5797587
< [7,] 0.08181966 3.1852914 0.23718510 -0.6767144 6.0277649
< [8,] 0.26667907 -0.3787460 -0.05567023 -0.5386512 -1.1090284
< [9,] -1.14829558 -0.5939320 -0.30327528 0.1331987 -1.6170222
< [10,] 0.43484484 0.4061924 0.15239456 -0.4689052 -1.9365557
< [11,] 0.02830061 -1.4482595 0.64415224 -0.9174295 2.7359112
< [12,] -1.21038176 -0.5369097 -0.61298880 0.2054354 -1.7348950
< [13,] -0.53601259 0.2252415 -0.33117531 -0.3690040 -1.4083281
< [14,] 1.81452195 1.3062514 0.91952922 1.9574102 2.5809286
< [15,] 0.07779253 -1.0853810 0.45709748 -0.8395791 0.2020978
---
> [1,] 0.85278081 -0.2247850 0.07302970 -0.1442070 -0.9634923
> [2,] 1.70342425 -0.0476419 1.19055345 1.6820162 -1.0127268
> [3,] -1.75059965 -0.3340379 -1.72645582 1.8351650 1.8000202
> [4,] -0.15552297 0.2026892 0.43296702 -0.6893599 -1.4315786
> [5,] -0.12953233 -0.9838683 -0.68846571 -0.6770129 -0.5576955
> [6,] -0.33020957 0.3070305 -0.38415893 -0.4921914 -1.5806796
> [7,] 0.08124385 3.1854369 0.23706941 -0.6768114 6.0284476
> [8,] 0.26650783 -0.3785437 -0.05560267 -0.5386742 -1.1090288
> [9,] -1.14849813 -0.5942606 -0.30325840 0.1336487 -1.6163416
> [10,] 0.43466534 0.4056715 0.15242875 -0.4690608 -1.9368240
> [11,] 0.02815366 -1.4492071 0.64446998 -0.9176305 2.7387662
> [12,] -1.21036511 -0.5376472 -0.61231215 0.2052291 -1.7342086
> [13,] -0.53592238 0.2250517 -0.33100094 -0.3690601 -1.4085335
> [14,] 1.81473915 1.3068211 0.91982779 1.9580283 2.5799493
> [15,] 0.07771403 -1.0862084 0.45735047 -0.8397008 0.2042601
1186c1186
< -4.6318 -1.6801 -2.2447 -0.1292 -0.0124
---
> -4.63391 -1.68002 -2.24127 -0.12953 -0.01241
1191c1191
< BFGSR maximization, 97 iterations
---
> BFGSR maximization, 73 iterations
1193c1193
< Log-Likelihood: -73.19884
---
> Log-Likelihood: -73.19882
1197,1201c1197,1201
< (Intercept) -4.631753 0.474747 -9.7563 < 2.2e-16 ***
< x1 -1.680140 0.209250 -8.0293 9.801e-16 ***
< x2 -2.244652 0.674028 -3.3302 0.0008678 ***
< logSigmaMu -0.129238 0.257999 -0.5009 0.6164241
< logSigmaNu -0.012404 0.129692 -0.0956 0.9238061
---
> (Intercept) -4.633912 0.474500 -9.7659 < 2.2e-16 ***
> x1 -1.680022 0.209226 -8.0297 9.772e-16 ***
> x2 -2.241274 0.673908 -3.3258 0.0008817 ***
> logSigmaMu -0.129526 0.258065 -0.5019 0.6157303
> logSigmaNu -0.012412 0.129690 -0.0957 0.9237579
1217,1221c1217,1221
< (Intercept) -4.6318 0.4748 -9.756 < 2e-16 ***
< x1 -1.6801 0.2092 -8.029 9.8e-16 ***
< x2 -2.2447 0.6740 -3.330 0.000868 ***
< logSigmaMu -0.1292 0.2580 -0.501 0.616424
< logSigmaNu -0.0124 0.1297 -0.096 0.923806
---
> (Intercept) -4.63391 0.47450 -9.766 < 2e-16 ***
> x1 -1.68002 0.20923 -8.030 9.77e-16 ***
> x2 -2.24127 0.67391 -3.326 0.000882 ***
> logSigmaMu -0.12953 0.25807 -0.502 0.615730
> logSigmaNu -0.01241 0.12969 -0.096 0.923758
1225c1225
< BFGSR maximization, 97 iterations
---
> BFGSR maximization, 73 iterations
1227c1227
< Log-likelihood: -73.19884 on 5 Df
---
> Log-likelihood: -73.19882 on 5 Df
1231c1231
< -4.63175277 -1.68014032 -2.24465151 -0.12923788 -0.01240386
---
> -4.63391165 -1.68002232 -2.24127447 -0.12952582 -0.01241152
1234c1234
< -4.6317528 -1.6801403 -2.2446515 0.8787649 0.9876728
---
> -4.6339117 -1.6800223 -2.2412745 0.8785119 0.9876652
1237,1241c1237,1241
< (Intercept) 0.225384306 -0.020630757 -0.254816385 0.023948458 0.003018251
< x1 -0.020630757 0.043785732 0.008625713 -0.013410928 -0.002970701
< x2 -0.254816385 0.008625713 0.454313172 -0.017255660 -0.001612911
< logSigmaMu 0.023948458 -0.013410928 -0.017255660 0.066563284 -0.002628082
< logSigmaNu 0.003018251 -0.002970701 -0.001612911 -0.002628082 0.016820144
---
> (Intercept) 0.225149823 -0.020580559 -0.254635601 0.023847765 0.002981648
> x1 -0.020580559 0.043775600 0.008573460 -0.013405916 -0.002969797
> x2 -0.254635601 0.008573460 0.454151985 -0.017194816 -0.001524188
> logSigmaMu 0.023847765 -0.013405916 -0.017194816 0.066597765 -0.002638193
> logSigmaNu 0.002981648 -0.002969797 -0.001524188 -0.002638193 0.016819556
1244,1248c1244,1248
< (Intercept) 0.225384306 -0.020630757 -0.254816385 0.021045064 0.002981044
< x1 -0.020630757 0.043785732 0.008625713 -0.011785053 -0.002934080
< x2 -0.254816385 0.008625713 0.454313172 -0.015163668 -0.001593028
< sigmaMu 0.021045064 -0.011785053 -0.015163668 0.051402015 -0.002280997
< sigmaNu 0.002981044 -0.002934080 -0.001593028 -0.002280997 0.016408007
---
> (Intercept) 0.22514982 -0.020580559 -0.254635601 0.020950545 0.002944870
> x1 -0.02058056 0.043775600 0.008573460 -0.011777256 -0.002933165
> x2 -0.25463560 0.008573460 0.454151985 -0.015105851 -0.001505387
> sigmaMu 0.02095055 -0.011777256 -0.015105851 0.051399034 -0.002289095
> sigmaNu 0.00294487 -0.002933165 -0.001505387 -0.002289095 0.016407183
1250c1250
< 'log Lik.' -73.19884 (df=5)
---
> 'log Lik.' -73.19882 (df=5)
1252c1252
< [1] -40.0000 156.3977
---
> [1] -40.0000 156.3976
1255c1255
< [1] -73.19884
---
> [1] -73.19882
1259c1259
< -4.63175277 -1.68014032 -2.24465151 -0.12923788 -0.01240386
---
> -4.63391165 -1.68002232 -2.24127447 -0.12952582 -0.01241152
1263c1263
< -0.0037179702 -0.0004262131 0.0069093429 -0.0015795700 0.0007285804
---
> -7.425390e-04 -5.237316e-05 1.205358e-03 2.666987e-04 4.763349e-04
1267,1271c1267,1271
< (Intercept) -13.311559 -4.095416 -7.3032621 2.1220846 1.2965925
< x1 -4.095416 -26.072432 -1.9892117 -4.4831688 -4.7611340
< x2 -7.303262 -1.989212 -6.2341132 0.6288594 0.4596484
< logSigmaMu 2.122085 -4.483169 0.6288594 -16.6737962 -3.7175039
< logSigmaNu 1.296593 -4.761134 0.4596483 -3.7175039 -61.0628485
---
> (Intercept) -13.321012 -4.096571 -7.3072433 2.1105735 1.306995
> x1 -4.096571 -26.076360 -1.9903898 -4.4846924 -4.761848
> x2 -7.307243 -1.990390 -6.2361292 0.6247544 0.476812
> logSigmaMu 2.110574 -4.484692 0.6247544 -16.6602022 -3.722583
> logSigmaNu 1.306995 -4.761848 0.4768120 -3.7225828 -61.067774
1287c1287
< [1] 97
---
> [1] 73
1294,1308c1294,1308
< [1,] 0.85249396 -0.22452491 0.07311823 -0.1443259 -0.9647829
< [2,] 1.70284739 -0.04747242 1.19027559 1.6815846 -1.0128930
< [3,] -1.75003323 -0.33322641 -1.72588005 1.8349824 1.7987336
< [4,] -0.15543033 0.20288956 0.43319176 -0.6891984 -1.4307644
< [5,] -0.12964896 -0.98351317 -0.68822682 -0.6770222 -0.5586096
< [6,] -0.33000885 0.30740618 -0.38406122 -0.4921028 -1.5809463
< [7,] 0.08080474 3.18584682 0.23700004 -0.6770301 6.0304679
< [8,] 0.26610849 -0.37827539 -0.05571105 -0.5389032 -1.1087266
< [9,] -1.14846044 -0.59386922 -0.30322643 0.1338525 -1.6161483
< [10,] 0.43419265 0.40553728 0.15220210 -0.4693287 -1.9367060
< [11,] 0.02798827 -1.44940261 0.64445777 -0.9180480 2.7395444
< [12,] -1.21001401 -0.53766184 -0.61192758 0.2048318 -1.7339614
< [13,] -0.53621752 0.22525020 -0.33112832 -0.3686547 -1.4084680
< [14,] 1.81430966 1.30691853 0.91963335 1.9580051 2.5790067
< [15,] 0.07735021 -1.08632881 0.45719199 -0.8402221 0.2049826
---
> [1,] 0.85300597 -0.22538442 0.07270967 -0.1440551 -0.9615875
> [2,] 1.70313415 -0.04819704 1.19001008 1.6809910 -1.0132088
> [3,] -1.75081925 -0.33365931 -1.72733510 1.8354213 1.8035220
> [4,] -0.15575929 0.20248810 0.43239154 -0.6891027 -1.4343552
> [5,] -0.12954290 -0.98419670 -0.68923518 -0.6769998 -0.5551304
> [6,] -0.33034949 0.30889860 -0.38462520 -0.4921179 -1.5796319
> [7,] 0.08189456 3.18535013 0.23720553 -0.6766812 6.0277787
> [8,] 0.26673068 -0.37878111 -0.05566019 -0.5386220 -1.1090629
> [9,] -1.14832130 -0.59395010 -0.30328878 0.1331873 -1.6170652
> [10,] 0.43493369 0.40626633 0.15243113 -0.4688524 -1.9365296
> [11,] 0.02832945 -1.44822208 0.64415440 -0.9173654 2.7358109
> [12,] -1.21044619 -0.53688713 -0.61307141 0.2055182 -1.7349351
> [13,] -0.53600998 0.22524959 -0.33118372 -0.3690370 -1.4082862
> [14,] 1.81463246 1.30632858 0.91958449 1.9574877 2.5811938
> [15,] 0.07784490 -1.08535582 0.45711810 -0.8395052 0.2019637
1375c1375
< -0.231900 1.893000 1.966540 0.001578 0.052676
---
> -0.233782 1.893280 1.969602 0.001543 0.052867
1380,1382c1380,1384
< BFGSR maximization, 94 iterations
< Return code 2: successive function values within tolerance limit
< Log-Likelihood: -64.31275
---
> BFGSR maximization, 96 iterations
> Return code 3: Last step could not find a value above the current.
> Boundary of parameter space?
> Consider switching to a more robust optimisation method temporarily.
> Log-Likelihood: -64.31273
1386,1390c1388,1392
< (Intercept) -0.2318997 0.5480920 -0.4231 0.67222
< x1 1.8929999 0.3010150 6.2887 3.201e-10 ***
< x2 1.9665398 0.8184466 2.4028 0.01627 *
< logSigmaMu 0.0015775 0.2778340 0.0057 0.99547
< logSigmaNu 0.0526758 0.1629819 0.3232 0.74654
---
> (Intercept) -0.2337822 0.5483289 -0.4264 0.66985
> x1 1.8932801 0.3011173 6.2875 3.226e-10 ***
> x2 1.9696025 0.8188341 2.4054 0.01616 *
> logSigmaMu 0.0015433 0.2778758 0.0056 0.99557
> logSigmaNu 0.0528675 0.1630158 0.3243 0.74570
1406,1410c1408,1412
< (Intercept) -0.231900 0.548092 -0.423 0.6722
< x1 1.893000 0.301015 6.289 3.2e-10 ***
< x2 1.966540 0.818447 2.403 0.0163 *
< logSigmaMu 0.001578 0.277834 0.006 0.9955
< logSigmaNu 0.052676 0.162982 0.323 0.7465
---
> (Intercept) -0.233782 0.548329 -0.426 0.6698
> x1 1.893280 0.301117 6.288 3.23e-10 ***
> x2 1.969602 0.818834 2.405 0.0162 *
> logSigmaMu 0.001543 0.277876 0.006 0.9956
> logSigmaNu 0.052867 0.163016 0.324 0.7457
1414,1416c1416,1420
< BFGSR maximization, 94 iterations
< Return code 2: successive function values within tolerance limit
< Log-likelihood: -64.31275 on 5 Df
---
> BFGSR maximization, 96 iterations
> Return code 3: Last step could not find a value above the current.
> Boundary of parameter space?
> Consider switching to a more robust optimisation method temporarily.
> Log-likelihood: -64.31273 on 5 Df
1430,1434c1434,1438
< (Intercept) -0.2319 0.5481 -0.423 0.672220
< x1 1.8930 0.3010 6.289 3.20e-10 ***
< x2 1.9665 0.8184 2.403 0.016271 *
< sigmaMu 1.0016 0.2783 3.599 0.000319 ***
< sigmaNu 1.0541 0.1718 6.136 8.48e-10 ***
---
> (Intercept) -0.2338 0.5483 -0.426 0.66985
> x1 1.8933 0.3011 6.288 3.23e-10 ***
> x2 1.9696 0.8188 2.405 0.01616 *
> sigmaMu 1.0015 0.2783 3.599 0.00032 ***
> sigmaNu 1.0543 0.1719 6.134 8.55e-10 ***
1438,1440c1442,1446
< BFGSR maximization, 94 iterations
< Return code 2: successive function values within tolerance limit
< Log-likelihood: -64.31275 on 5 Df
---
> BFGSR maximization, 96 iterations
> Return code 3: Last step could not find a value above the current.
> Boundary of parameter space?
> Consider switching to a more robust optimisation method temporarily.
> Log-likelihood: -64.31273 on 5 Df
1444c1450
< -0.23189973 1.89299993 1.96653982 0.00157755 0.05267579
---
> -0.23378216 1.89328013 1.96960246 0.00154326 0.05286747
1447c1453
< -0.2318997 1.8929999 1.9665398 1.0015788 1.0540878
---
> -0.2337822 1.8932801 1.9696025 1.0015445 1.0542899
1450,1454c1456,1460
< (Intercept) 0.30040486 -0.03128045 -0.36368602 -0.01583160 -0.01631431
< x1 -0.03128045 0.09061003 0.03163919 0.03517309 0.01591197
< x2 -0.36368602 0.03163919 0.66985490 0.01850595 0.02436443
< logSigmaMu -0.01583160 0.03517309 0.01850595 0.07719171 0.00433545
< logSigmaNu -0.01631431 0.01591197 0.02436443 0.00433545 0.02656310
---
> (Intercept) 0.30066457 -0.03140943 -0.36406867 -0.015974524 -0.016384019
> x1 -0.03140943 0.09067161 0.03182344 0.035194978 0.015930682
> x2 -0.36406867 0.03182344 0.67048933 0.018652238 0.024503878
> logSigmaMu -0.01597452 0.03519498 0.01865224 0.077214979 0.004337456
> logSigmaNu -0.01638402 0.01593068 0.02450388 0.004337456 0.026574149
1457,1461c1463,1467
< (Intercept) 0.30040486 -0.03128045 -0.36368602 -0.01585659 -0.01719672
< x1 -0.03128045 0.09061003 0.03163919 0.03522863 0.01677261
< x2 -0.36368602 0.03163919 0.66985490 0.01853517 0.02568225
< sigmaMu -0.01585659 0.03522863 0.01853517 0.07743564 0.00457716
< sigmaNu -0.01719672 0.01677261 0.02568225 0.00457716 0.02951429
---
> (Intercept) 0.30066457 -0.03140943 -0.36406867 -0.015999196 -0.017273506
> x1 -0.03140943 0.09067161 0.03182344 0.035249335 0.016795557
> x2 -0.36406867 0.03182344 0.67048933 0.018681045 0.025834191
> sigmaMu -0.01599920 0.03524934 0.01868105 0.077453673 0.004579999
> sigmaNu -0.01727351 0.01679556 0.02583419 0.004579999 0.029537890
1464,1468c1470,1474
< (Intercept) -0.23189973 0.5480920 -0.423103654 6.722196e-01
< x1 1.89299993 0.3010150 6.288723081 3.200879e-10
< x2 1.96653982 0.8184466 2.402770964 1.627137e-02
< logSigmaMu 0.00157755 0.2778340 0.005678032 9.954696e-01
< logSigmaNu 0.05267579 0.1629819 0.323200237 7.465436e-01
---
> (Intercept) -0.23378216 0.5483289 -0.426353903 6.698500e-01
> x1 1.89328013 0.3011173 6.287517678 3.225823e-10
> x2 1.96960246 0.8188341 2.405374171 1.615591e-02
> logSigmaMu 0.00154326 0.2778758 0.005553777 9.955687e-01
> logSigmaNu 0.05286747 0.1630158 0.324308863 7.457042e-01
1471,1475c1477,1481
< (Intercept) -0.2318997 0.5480920 -0.4231037 6.722196e-01
< x1 1.8929999 0.3010150 6.2887231 3.200879e-10
< x2 1.9665398 0.8184466 2.4027710 1.627137e-02
< sigmaMu 1.0015788 0.2782726 3.5992721 3.191092e-04
< sigmaNu 1.0540878 0.1717972 6.1356510 8.481114e-10
---
> (Intercept) -0.2337822 0.5483289 -0.4263539 6.698500e-01
> x1 1.8932801 0.3011173 6.2875177 3.225823e-10
> x2 1.9696025 0.8188341 2.4053742 1.615591e-02
> sigmaMu 1.0015445 0.2783050 3.5987296 3.197754e-04
> sigmaNu 1.0542899 0.1718659 6.1343749 8.549467e-10
1477c1483
< 'log Lik.' -64.31275 (df=5)
---
> 'log Lik.' -64.31273 (df=5)
1484c1490
< [1] -64.31275
---
> [1] -64.31273
1488c1494
< -0.23189973 1.89299993 1.96653982 0.00157755 0.05267579
---
> -0.23378216 1.89328013 1.96960246 0.00154326 0.05286747
1492c1498
< -0.0048556434 -0.0005103978 0.0060206681 0.0003774340 -0.0003555863
---
> -0.002894857 -0.002369745 0.002610000 0.003016516 -0.002543448
1496,1500c1502,1506
< (Intercept) -9.9315573 -1.4921445 -5.3079876 -0.06612759 -0.3264207
< x1 -1.4921445 -15.1449243 -0.5462583 6.29737022 7.6289881
< x2 -5.3079876 -0.5462583 -4.3921155 0.15309422 1.0707926
< logSigmaMu -0.0661276 6.2973702 0.1530942 -15.79725161 -1.3749987
< logSigmaNu -0.3264207 7.6289881 1.0707926 -1.37499869 -43.1743923
---
> (Intercept) -9.92921213 -1.4915778 -5.3068262 -0.07430279 -0.3220588
> x1 -1.49157779 -15.1380768 -0.5453987 6.29452164 7.6308755
> x2 -5.30682618 -0.5453987 -4.3907451 0.15071751 1.0791686
> logSigmaMu -0.07430279 6.2945216 0.1507175 -15.79417345 -1.3802899
> logSigmaNu -0.32205878 7.6308755 1.0791686 -1.38028985 -43.1734818
1503c1509
< [1] 2
---
> [1] 3
1506c1512
< [1] "successive function values within tolerance limit"
---
> [1] "Last step could not find a value above the current.\nBoundary of parameter space? \nConsider switching to a more robust optimisation method temporarily."
1509c1515,1541
< NULL
---
> $last.step$theta0
> (Intercept) x1 x2 logSigmaMu logSigmaNu
> -0.233805135 1.893310605 1.969641022 0.001551443 0.052675686
>
> $last.step$f0
> [1] -64.31273
> attr(,"gradient")
> [,1] [,2] [,3] [,4] [,5]
> [1,] -0.85417510 -0.10609337 -0.18146777 -0.0235494 -0.8369719
> [2,] -1.41680128 -0.02702422 -0.97196805 1.4567554 -1.1645981
> [3,] 1.29745993 1.02088535 0.92544703 1.0920903 0.1540724
> [4,] 0.07075595 -0.25207707 -0.39840982 -0.7015966 -1.8261020
> [5,] 0.08922410 0.80745931 0.64769792 -0.6906630 -0.2847701
> [6,] 0.55923778 0.49468626 0.42897976 -0.2914444 -0.3603540
> [7,] -0.12034788 -3.06219247 -0.23674144 -0.7063845 6.3455056
> [8,] -0.20961505 0.33550846 0.08326478 -0.5906480 -1.0295346
> [9,] 1.03436546 0.66021829 0.28832659 0.1971790 -1.2970105
> [10,] -0.42828980 -0.58564682 -0.11733332 -0.3957152 -1.8006439
> [11,] -0.04064163 1.09509187 -0.50821521 -0.8668820 2.0017961
> [12,] 1.14034027 0.50533928 0.83221911 0.5852838 -0.7450190
> [13,] 0.53486256 -0.28181457 0.34791505 -0.2865027 -1.4336469
> [14,] -1.63819150 -1.34761986 -0.83803596 2.1201245 2.7646850
> [15,] -0.02103951 0.73904950 -0.29933851 -0.8946959 -0.4814000
>
> $last.step$climb
> [1] -394657.2 523581.9 662476.4 140569.0 -3294770.3
>
1516c1548
< [1] 94
---
> [1] 96
1523,1537c1555,1569
< [1,] -0.85434599 -0.10565305 -0.18121062 -0.02337427 -0.8361146
< [2,] -1.41630045 -0.02581304 -0.97116597 1.45530449 -1.1649410
< [3,] 1.29736056 1.02154402 0.92570979 1.09184261 0.1541692
< [4,] 0.07070338 -0.25163363 -0.39793538 -0.70163406 -1.8289795
< [5,] 0.08897035 0.80801309 0.64827856 -0.69088855 -0.2823746
< [6,] 0.55943727 0.49431446 0.42924346 -0.29124298 -0.3594947
< [7,] -0.12101921 -3.06144100 -0.23683787 -0.70609352 6.3418749
< [8,] -0.21001563 0.33591070 0.08328861 -0.59060091 -1.0295583
< [9,] 1.03398829 0.66067177 0.28827093 0.19605516 -1.2974166
< [10,] -0.42842809 -0.58582999 -0.11731365 -0.39554051 -1.8005518
< [11,] -0.04082804 1.09437392 -0.50800537 -0.86640175 1.9998371
< [12,] 1.14023958 0.50473685 0.83276212 0.58501961 -0.7445396
< [13,] 0.53436182 -0.28158337 0.34776736 -0.28684002 -1.4338173
< [14,] -1.63787164 -1.34657026 -0.83767037 2.11917496 2.7644169
< [15,] -0.02110785 0.73844912 -0.29916093 -0.89440283 -0.4828657
---
> [1,] -0.85399301 -0.10602099 -0.18140766 -0.02364687 -0.8371385
> [2,] -1.41680831 -0.02700922 -0.97193915 1.45664700 -1.1645431
> [3,] 1.29738032 1.02095947 0.92539297 1.09190281 0.1539769
> [4,] 0.07100562 -0.25197861 -0.39807733 -0.70154825 -1.8266607
> [5,] 0.08922699 0.80745668 0.64756678 -0.69055935 -0.2850413
> [6,] 0.55925418 0.49480489 0.42892323 -0.29147726 -0.3608594
> [7,] -0.12039508 -3.06089075 -0.23666324 -0.70622873 6.3420715
> [8,] -0.20969533 0.33555238 0.08322106 -0.59050851 -1.0297117
> [9,] 1.03428932 0.66016070 0.28831450 0.19721031 -1.2971304
> [10,] -0.42828624 -0.58538485 -0.11736408 -0.39582567 -1.8009247
> [11,] -0.04081588 1.09472020 -0.50816401 -0.86667778 2.0006839
> [12,] 1.14045635 0.50528295 0.83226925 0.58550194 -0.7452782
> [13,] 0.53470207 -0.28162570 0.34780933 -0.28674186 -1.4339655
> [14,] -1.63795687 -1.34717561 -0.83791582 2.11940059 2.7641334
> [15,] -0.02125898 0.73877872 -0.29935581 -0.89443186 -0.4821556
1604,1608c1636,1640
< [1] "Component 1: Mean relative difference: 4.895473e-07"
< [2] "Component 2: Mean relative difference: 0.001842494"
< [3] "Component 3: Mean relative difference: 0.8564203"
< [4] "Component 4: Mean relative difference: 0.001161826"
< [5] "Component 9: Mean relative difference: 0.01149425"
---
> [1] "Component 1: Mean relative difference: 1.585932e-07"
> [2] "Component 2: Mean relative difference: 0.0009942645"
> [3] "Component 3: Mean relative difference: 5.267562"
> [4] "Component 4: Mean relative difference: 0.000453646"
> [5] "Component 9: Mean relative difference: 0.2352941"
1610c1642
< [1] "Mean relative difference: 0.00117129"
---
> [1] "Mean relative difference: 0.0006692936"
1644c1676
< [1] -3.58343e-05
---
> [1] 1.160884e-05
1646c1678
< [1] 3.58343e-05
---
> [1] -1.160884e-05
1670c1702
< -0.221465 1.640259 2.106315 -0.167596 -0.001179
---
> -0.223438 1.640494 2.109440 -0.167351 -0.001139
1675c1707
< BFGSR maximization, 79 iterations
---
> BFGSR maximization, 91 iterations
1677c1709
< Log-Likelihood: -71.19259
---
> Log-Likelihood: -71.19256
1681,1685c1713,1717
< (Intercept) -0.2214648 0.4723842 -0.4688 0.639196
< x1 1.6402589 0.2110148 7.7732 7.653e-15 ***
< x2 2.1063152 0.6847709 3.0759 0.002098 **
< logSigmaMu -0.1675959 0.2715719 -0.6171 0.537147
< logSigmaNu -0.0011788 0.1322720 -0.0089 0.992889
---
> (Intercept) -0.2234379 0.4725748 -0.4728 0.63635
> x1 1.6404941 0.2110522 7.7729 7.669e-15 ***
> x2 2.1094395 0.6848755 3.0800 0.00207 **
> logSigmaMu -0.1673511 0.2714906 -0.6164 0.53762
> logSigmaNu -0.0011386 0.1322729 -0.0086 0.99313
1700,1704c1732,1736
< (Intercept) -0.221465 0.472384 -0.469 0.6392
< x1 1.640259 0.211015 7.773 7.65e-15 ***
< x2 2.106315 0.684771 3.076 0.0021 **
< logSigmaMu -0.167596 0.271572 -0.617 0.5371
< logSigmaNu -0.001179 0.132272 -0.009 0.9929
---
> (Intercept) -0.223438 0.472575 -0.473 0.63635
> x1 1.640494 0.211052 7.773 7.67e-15 ***
> x2 2.109440 0.684875 3.080 0.00207 **
> logSigmaMu -0.167351 0.271491 -0.616 0.53762
> logSigmaNu -0.001139 0.132273 -0.009 0.99313
1708c1740
< BFGSR maximization, 79 iterations
---
> BFGSR maximization, 91 iterations
1710c1742
< Log-likelihood: -71.19259 on 5 Df
---
> Log-likelihood: -71.19256 on 5 Df
1713c1745
< 'log Lik.' -71.19259 (df=5)
---
> 'log Lik.' -71.19256 (df=5)
1715c1747
< [1] -36.0000 152.3852
---
> [1] -36.0000 152.3851
1718c1750
< [1] -71.19259
---
> [1] -71.19256
1722c1754
< -0.221464752 1.640258893 2.106315241 -0.167595901 -0.001178816
---
> -0.223437886 1.640494086 2.109439512 -0.167351143 -0.001138553
1726c1758
< -0.0046843333 0.0028363445 0.0096364365 -0.0002565316 0.0014964748
---
> -0.0023645994 0.0002134735 0.0043525355 -0.0012274752 -0.0003310896
1730,1734c1762,1766
< (Intercept) -13.797404 -4.347461 -7.5313719 -1.1048929 -1.947087
< x1 -4.347461 -25.818216 -2.0585460 4.6507080 4.049235
< x2 -7.531372 -2.058546 -6.2677340 -0.1417075 -1.070874
< logSigmaMu -1.104893 4.650708 -0.1417075 -14.9203448 -3.777822
< logSigmaNu -1.947087 4.049235 -1.0708741 -3.7778221 -58.837170
---
> (Intercept) -13.788369 -4.345893 -7.5273217 -1.1108512 -1.941872
> x1 -4.345893 -25.811539 -2.0571716 4.6503075 4.052490
> x2 -7.527322 -2.057172 -6.2654750 -0.1435365 -1.057070
> logSigmaMu -1.110851 4.650307 -0.1435365 -14.9303962 -3.772496
> logSigmaNu -1.941872 4.052490 -1.0570698 -3.7724962 -58.832591
1750c1782
< [1] 79
---
> [1] 91
1757,1771c1789,1803
< [1,] -0.50867309 0.089661938 0.10391528 -0.39414787 -0.52948289
< [2,] -1.81721692 0.067562218 -1.24707181 1.79806073 -0.96150237
< [3,] 1.78515937 0.485392505 1.77061378 1.73390115 1.89836873
< [4,] 0.15198290 -0.162436121 -0.39569081 -0.73684977 -1.58749991
< [5,] 0.08161573 1.039440622 0.69863099 -0.67808021 -0.44430823
< [6,] 0.33276841 -0.232607380 0.37409021 -0.53954830 -1.57302335
< [7,] -0.18117013 -3.029481590 -0.24867098 -0.62199843 5.47970088
< [8,] 0.01865170 -0.004065602 0.01066756 -0.41765475 -0.58174902
< [9,] 1.11575194 0.666927460 0.29571555 0.06309052 -1.68593350
< [10,] -0.53817741 -0.420509612 -0.20436096 -0.40627038 -1.97422937
< [11,] -0.08331019 1.378219641 -0.64759857 -0.82296425 2.49462529
< [12,] 1.25921719 0.531518586 0.67013118 0.23109989 -1.79396631
< [13,] 0.44655657 -0.163352891 0.28639730 -0.46841631 -1.45032230
< [14,] -1.89286951 -1.286069028 -0.96198406 1.98290712 2.68310114
< [15,] -0.17497090 1.042635600 -0.49514823 -0.72338568 0.02771769
---
> [1,] -0.50851468 0.088549089 0.10332418 -0.39424112 -0.5321531
> [2,] -1.81705349 0.066630144 -1.24744468 1.79880183 -0.9613088
> [3,] 1.78438158 0.484622552 1.76921902 1.73324126 1.8938711
> [4,] 0.15178686 -0.162863846 -0.39633296 -0.73697159 -1.5844197
> [5,] 0.08174549 1.038619943 0.69766179 -0.67810229 -0.4478988
> [6,] 0.33238733 -0.231741427 0.37360317 -0.53970858 -1.5740604
> [7,] -0.18005740 -3.029939879 -0.24845697 -0.62247948 5.4823898
> [8,] 0.01878553 -0.004094775 0.01074411 -0.41775131 -0.5816437
> [9,] 1.11613611 0.666458518 0.29576147 0.06379078 -1.6850635
> [10,] -0.53761405 -0.420066528 -0.20419807 -0.40660173 -1.9743628
> [11,] -0.08280126 1.379236916 -0.64772340 -0.82356321 2.4973552
> [12,] 1.25885598 0.532122184 0.66915527 0.23058826 -1.7934726
> [13,] 0.44678737 -0.163413157 0.28637417 -0.46810019 -1.4504984
> [14,] -1.89274932 -1.287262705 -0.96222366 1.98378247 2.6810702
> [15,] -0.17444065 1.043356443 -0.49511091 -0.72391258 0.0298645
Running ‘censRegTest.R’ [28s/28s]
Comparing ‘censRegTest.Rout’ to ‘censRegTest.Rout.save’ ...8c8
< The following object is masked from 'package:base':
---
> The following object(s) are masked from 'package:base':
32c32
< -3.912847e-12 -1.202842e-10 -2.717793e-11 -1.295535e-11 -1.573332e-11
---
> -3.607684e-12 -1.108292e-10 -2.501133e-11 -1.195816e-11 -1.449160e-11
34c34
< -1.670604e-11 -3.827758e-12
---
> -1.542333e-11 -3.534235e-12
1443,1458c1443,1458
< (Intercept) age yearsmarried religiousness
< (Intercept) 7.515523730 -0.1196798503 0.089357155 -3.970038e-01
< age -0.119679850 0.0062557406 -0.008052616 5.380018e-04
< yearsmarried 0.089357155 -0.0080526163 0.018095076 -1.006372e-02
< religiousness -0.397003788 0.0005380018 -0.010063723 1.630153e-01
< occupation -0.176564350 -0.0039320119 0.003581751 5.214883e-03
< rating -0.616442291 0.0011114966 0.004771647 -2.571293e-05
< logSigma 0.006968089 -0.0005561255 0.001594861 -4.944751e-03
< occupation rating logSigma
< (Intercept) -0.176564350 -6.164423e-01 0.0069680895
< age -0.003932012 1.111497e-03 -0.0005561255
< yearsmarried 0.003581751 4.771647e-03 0.0015948607
< religiousness 0.005214883 -2.571293e-05 -0.0049447513
< occupation 0.064731952 -6.192755e-03 0.0008925920
< rating -0.006192755 1.663236e-01 -0.0068779111
< logSigma 0.000892592 -6.877911e-03 0.0045021647
---
> (Intercept) age yearsmarried religiousness occupation
> (Intercept) 7.51552374 -0.1196798502 0.089357154 -3.970038e-01 -0.176564351
> age -0.11967985 0.0062557406 -0.008052616 5.380018e-04 -0.003932012
> yearsmarried 0.08935715 -0.0080526163 0.018095076 -1.006372e-02 0.003581751
> religiousness -0.39700379 0.0005380018 -0.010063723 1.630153e-01 0.005214883
> occupation -0.17656435 -0.0039320119 0.003581751 5.214883e-03 0.064731952
> rating -0.61644229 0.0011114966 0.004771647 -2.571292e-05 -0.006192755
> logSigma 0.00696809 -0.0005561255 0.001594861 -4.944751e-03 0.000892592
> rating logSigma
> (Intercept) -6.164423e-01 0.0069680896
> age 1.111497e-03 -0.0005561255
> yearsmarried 4.771647e-03 0.0015948607
> religiousness -2.571292e-05 -0.0049447513
> occupation -6.192755e-03 0.0008925920
> rating 1.663236e-01 -0.0068779111
> logSigma -6.877911e-03 0.0045021647
1461c1461
< (Intercept) 7.51552373 -0.1196798503 0.089357155 -3.970038e-01 -0.176564350
---
> (Intercept) 7.51552374 -0.1196798502 0.089357154 -3.970038e-01 -0.176564351
1466c1466
< rating -0.61644229 0.0011114966 0.004771647 -2.571293e-05 -0.006192755
---
> rating -0.61644229 0.0011114966 0.004771647 -2.571292e-05 -0.006192755
1472c1472
< religiousness -2.571293e-05 -0.040779761
---
> religiousness -2.571292e-05 -0.040779761
1478c1478
< (Intercept) 8.1741974 2.74144555 2.981711 2.866428e-03
---
> (Intercept) 8.1741974 2.74144556 2.981711 2.866428e-03
1480c1480
< yearsmarried 0.5541418 0.13451794 4.119464 3.797547e-05
---
> yearsmarried 0.5541418 0.13451794 4.119464 3.797546e-05
1484c1484
< logSigma 2.1098592 0.06709817 31.444363 5.012720e-217
---
> logSigma 2.1098592 0.06709817 31.444362 5.012721e-217
1487c1487
< (Intercept) 8.1741974 2.74144555 2.981711 2.866428e-03
---
> (Intercept) 8.1741974 2.74144556 2.981711 2.866428e-03
1489c1489
< yearsmarried 0.5541418 0.13451794 4.119464 3.797547e-05
---
> yearsmarried 0.5541418 0.13451794 4.119464 3.797546e-05
2219c2219
< (Intercept) 4516.829762 -71.9275900 53.7036500 -238.59927667 -106.1151746
---
> (Intercept) 4516.829765 -71.9275900 53.7036498 -238.59927669 -106.1151749
2221,2225c2221,2225
< yearsmarried 53.703650 -4.8396224 10.8751405 -6.04829742 2.1526325
< religiousness -238.599277 0.3233391 -6.0482974 97.97220415 3.1341450
< occupation -106.115175 -2.3631392 2.1526325 3.13414496 38.9039031
< rating -370.481817 0.6680094 2.8677600 -0.01545347 -3.7218460
< logSigma 4.187822 -0.3342314 0.9585113 -2.97179550 0.5364478
---
> yearsmarried 53.703650 -4.8396224 10.8751405 -6.04829741 2.1526325
> religiousness -238.599277 0.3233391 -6.0482974 97.97220414 3.1341450
> occupation -106.115175 -2.3631392 2.1526325 3.13414498 38.9039031
> rating -370.481817 0.6680094 2.8677600 -0.01545346 -3.7218460
> logSigma 4.187822 -0.3342314 0.9585113 -2.97179551 0.5364478
2227c2227
< (Intercept) -370.48181666 4.1878218
---
> (Intercept) -370.48181717 4.1878218
2229,2232c2229,2232
< yearsmarried 2.86776000 0.9585113
< religiousness -0.01545347 -2.9717955
< occupation -3.72184601 0.5364478
< rating 99.96049033 -4.1336246
---
> yearsmarried 2.86776001 0.9585113
> religiousness -0.01545346 -2.9717955
> occupation -3.72184599 0.5364478
> rating 99.96049042 -4.1336246
2236c2236
< (Intercept) 9.47367040 -0.1866313725 0.1635733339 -0.418908001
---
> (Intercept) 9.47367041 -0.1866313723 0.1635733333 -0.418908001
2240c2240
< occupation -0.15702919 -0.0046649147 0.0057844633 -0.001256192
---
> occupation -0.15702919 -0.0046649147 0.0057844632 -0.001256192
2244c2244
< (Intercept) -0.1570291860 -0.6654380805 -0.0408634491
---
> (Intercept) -0.1570291873 -0.6654380820 -0.0408634490
2246,2249c2246,2249
< yearsmarried 0.0057844633 0.0012457507 -0.0005738356
< religiousness -0.0012561918 -0.0119720133 -0.0024757442
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< religiousness3 2.344052052 1.676859202 0.0085145593 0.0042720442
< religiousness4 1.676859202 2.490749126 -0.0079195868 -0.0274176771
< occupation 0.008514559 -0.007919587 0.0698641100 0.0025917525
< rating 0.004272044 -0.027417677 0.0025917525 0.1682841972
---
> yearsmarried -0.033584798 -0.057132953 0.0071748020 0.0047558306
> religiousness2 1.581608943 1.583425518 -0.0149992597 0.0059794242
> religiousness3 2.344052054 1.676859202 0.0085145596 0.0042720444
> religiousness4 1.676859202 2.490749125 -0.0079195866 -0.0274176771
> occupation 0.008514560 -0.007919587 0.0698641099 0.0025917525
> rating 0.004272044 -0.027417677 0.0025917525 0.1682841974
18009c18009
< (Intercept) -0.0520571901
---
> (Intercept) -0.0520571907
18012c18012
< religiousness2 0.0007548113
---
> religiousness2 0.0007548114
18014c18014
< religiousness4 -0.0029853184
---
> religiousness4 -0.0029853183
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [7s/7s] OK
- checking re-building of vignette PDFs ... [7s/7s] OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/hornik/tmp/R.check/r-release/Work/PKGS/censReg.Rcheck/00check.log’
for details.