- using R version 2.15.0 (2012-03-30)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘bbmle/DESCRIPTION’ ... OK
- this is package ‘bbmle’ version ‘1.0.4.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘bbmle’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [4s/4s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [38s/39s] OK
Running ‘BIC.R’ [1s/1s]
Comparing ‘BIC.Rout’ to ‘BIC.Rout.save’ ... OK
Running ‘ICtab.R’ [1s/1s]
Comparing ‘ICtab.Rout’ to ‘ICtab.Rout.save’ ... OK
Running ‘RUnit-tests.R’ [0s/0s]
Comparing ‘RUnit-tests.Rout’ to ‘RUnit-tests.Rout.save’ ... OK
Running ‘binomtest1.R’ [2s/2s]
Comparing ‘binomtest1.Rout’ to ‘binomtest1.Rout.save’ ...34,38c34,38
< 1 -4.2047557 0.294897769 -0.002923585
< 2 -3.1552214 0.341178854 0.002585988
< 3 -2.2351136 0.387459938 0.007009783
< 4 -1.4145493 0.433741023 0.010694587
< 5 -0.6726288 0.480022108 0.013859290
---
> 1 -4.2047344 0.294898645 -0.002923466
> 2 -3.1552066 0.341179554 0.002586064
> 3 -2.2351038 0.387460464 0.007009828
> 4 -1.4145435 0.433741374 0.010694613
> 5 -0.6726261 0.480022283 0.013859302
40,46c40,46
< 7 0.6321761 0.572584277 0.019113315
< 8 1.2156094 0.618865362 0.021399166
< 9 1.7630666 0.665146447 0.023494944
< 10 2.2805004 0.711427531 0.025475128
< 11 2.7729235 0.757708616 0.027355983
< 12 3.2447831 0.803989701 0.029170797
< 13 3.7001641 0.850270786 0.030945320
---
> 7 0.6321738 0.572584102 0.019113307
> 8 1.2156051 0.618865012 0.021399150
> 9 1.7630606 0.665145921 0.023494921
> 10 2.2804928 0.711426831 0.025475099
> 11 2.7729144 0.757707740 0.027355948
> 12 3.2447726 0.803988650 0.029170757
> 13 3.7001523 0.850269559 0.030945274
50,55c50,55
< 1 -3.7637762 0.3268562609 -0.0024274883
< 2 -3.1748517 0.3542631434 0.0007510291
< 3 -2.5644595 0.3843752423 0.0039295465
< 4 -1.9359517 0.4170488473 0.0071080638
< 5 -1.2938827 0.4519551545 0.0102865812
< 6 -0.6437634 0.4885999251 0.0134650986
---
> 1 -3.7637543 0.3268572493 -0.0024273676
> 2 -3.1748327 0.3542640536 0.0007511297
> 3 -2.5644438 0.3843760379 0.0039296269
> 4 -1.9359396 0.4170494900 0.0071081242
> 5 -1.2938745 0.4519556085 0.0102866214
> 6 -0.6437592 0.4886001613 0.0134651187
57,62c57,62
< 8 0.6563213 0.5646514516 0.0198221333
< 9 1.2951103 0.6028517056 0.0230006507
< 10 1.9201337 0.6405134863 0.0261791680
< 11 2.5281164 0.6773062179 0.0293576854
< 12 3.1168423 0.7130186373 0.0325362027
< 13 3.6850096 0.7475434510 0.0357147201
---
> 8 0.6563173 0.5646512092 0.0198221132
> 9 1.2951023 0.6028512247 0.0230006104
> 10 1.9201220 0.6405127788 0.0261791077
> 11 2.5281012 0.6773052997 0.0293576049
> 12 3.1168240 0.7130175259 0.0325361022
> 13 3.6849884 0.7475421634 0.0357145994
66c66
< a 0.402495806 0.68249529
---
> a 0.402495803 0.68249529
87c87
< a 0.402495806 0.68249529
---
> a 0.402495803 0.68249529
Running ‘controleval.R’ [1s/1s]
Comparing ‘controleval.Rout’ to ‘controleval.Rout.save’ ... OK
Running ‘doRUnit.R’ [1s/1s]
Running ‘eval.R’ [1s/1s]
Comparing ‘eval.Rout’ to ‘eval.Rout.save’ ... OK
Running ‘formulatest.R’ [2s/2s]
Comparing ‘formulatest.Rout’ to ‘formulatest.Rout.save’ ... OK
Running ‘glmcomp.R’ [1s/1s]
Comparing ‘glmcomp.Rout’ to ‘glmcomp.Rout.save’ ... OK
Running ‘grtest1.R’ [1s/1s]
Comparing ‘grtest1.Rout’ to ‘grtest1.Rout.save’ ... OK
Running ‘methods.R’ [1s/1s]
Comparing ‘methods.Rout’ to ‘methods.Rout.save’ ... OK
Running ‘mortanal.R’ [2s/2s]
Comparing ‘mortanal.Rout’ to ‘mortanal.Rout.save’ ... OK
Running ‘optimize.R’ [1s/1s]
Comparing ‘optimize.Rout’ to ‘optimize.Rout.save’ ... OK
Running ‘optimizers.R’ [1s/1s]
Comparing ‘optimizers.Rout’ to ‘optimizers.Rout.save’ ... OK
Running ‘optimx.R’ [6s/6s]
Comparing ‘optimx.Rout’ to ‘optimx.Rout.save’ ...4a5,22
>
> Attaching package: 'Rvmmin'
>
> The following object(s) are masked from 'package:Rcgmin':
>
> optansout
>
>
> Attaching package: 'optimx'
>
> The following object(s) are masked from 'package:Rvmmin':
>
> optansout
>
> The following object(s) are masked from 'package:Rcgmin':
>
> optansout
>
16c34,35
< There were 11 warnings (use warnings() to see them)
---
> Warning message:
> In dpois(x, lambda, log) : NaNs produced
60c79
< There were 50 or more warnings (use warnings() to see the first 50)
---
> There were 14 warnings (use warnings() to see them)
Running ‘order.R’ [1s/1s]
Comparing ‘order.Rout’ to ‘order.Rout.save’ ... OK
Running ‘parscale.R’ [1s/1s]
Comparing ‘parscale.Rout’ to ‘parscale.Rout.save’ ...147c147
< rate 1.407221e-11
---
> rate 1.407176e-11
Running ‘predict.R’ [1s/1s]
Comparing ‘predict.Rout’ to ‘predict.Rout.save’ ... OK
Running ‘richards.R’ [7s/7s]
Comparing ‘richards.Rout’ to ‘richards.Rout.save’ ... OK
Running ‘startvals.R’ [1s/1s]
Comparing ‘startvals.Rout’ to ‘startvals.Rout.save’ ... OK
Running ‘startvals2.R’ [1s/1s]
Comparing ‘startvals2.Rout’ to ‘startvals2.Rout.save’ ... OK
Running ‘test-relist1.R’ [1s/1s]
Comparing ‘test-relist1.Rout’ to ‘test-relist1.Rout.save’ ... OK
Running ‘testbounds.R’ [1s/1s]
Comparing ‘testbounds.Rout’ to ‘testbounds.Rout.save’ ... OK
Running ‘testderiv.R’ [1s/1s]
Comparing ‘testderiv.Rout’ to ‘testderiv.Rout.save’ ... OK
Running ‘testenv.R’ [1s/1s]
Comparing ‘testenv.Rout’ to ‘testenv.Rout.save’ ... OK
Running ‘testparpred.R’ [1s/1s]
Comparing ‘testparpred.Rout’ to ‘testparpred.Rout.save’ ... OK
Running ‘tmptest.R’ [1s/1s]
Comparing ‘tmptest.Rout’ to ‘tmptest.Rout.save’ ... OK
Running ‘update.R’ [1s/1s]
Comparing ‘update.Rout’ to ‘update.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [19s/19s] OK
- checking re-building of vignette PDFs ... [20s/20s] OK
- checking PDF version of manual ... OK